RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 CMIPQ8IY22 773 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 PEX5LQ8IYB4 626 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 CLEC4FQ8N1N0 589 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 ZNF619Q8N2I2 560 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 ZNF614Q8N883 585 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 ANKS4BQ8N8V4 417 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 TOR1AIP2Q8NFQ8 470 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 RP9Q8TA86 221 aaKnown RBP8.34□□□□□ -1.07
NUP54-207ENST00000508583 PNPT1Q8TCS8 783 aaKnown RBP8.34□□□□□ -1.07
NUP54-207ENST00000508583 RAB8BQ92930 207 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 ROPN1LQ96C74 230 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 NTNG2Q96CW9 530 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 CMTM5Q96DZ9 223 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 OTUB1Q96FW1 271 aaPredicted RBP8.34□□□□□ -1.07
NUP54-207ENST00000508583 GNRHR2Q96P88 292 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 SPATA9Q9BWV2 254 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 TSPAN10Q9H1Z9 355 aaPredicted RBP8.34□□□□□ -1.07
NUP54-207ENST00000508583 UBQLN3Q9H347 655 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 MTHFD2LQ9H903 347 aaPredicted RBP8.34□□□□□ -1.07
NUP54-207ENST00000508583 SUCOQ9UBS9 1254 aaKnown RBP8.34□□□□□ -1.07
NUP54-207ENST00000508583 PRDM4Q9UKN5 801 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 SLC35A3Q9Y2D2 325 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 DTNAQ9Y4J8 743 aa8.34□□□□□ -1.07
NUP54-207ENST00000508583 DNAJC13O75165 2243 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 NDUFAB1O14561 156 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 HCRTR2O43614 444 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 H6PDO95479 791 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 FAM107AO95990 144 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ACTL6AO96019 429 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 STSP08842 583 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 HOXD4P09016 255 aaPredicted RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 BMP2P12643 396 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 UQCRBP14927 111 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 GNLYP22749 145 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 DPP4P27487 766 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 PTGER4P35408 488 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ZNF41P51814 821 aaPredicted RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 GAS1P54826 345 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 GYS2P54840 703 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 SF3A3Q12874 501 aaKnown RBP eCLIP8.33□□□□□ -1.08
NUP54-207ENST00000508583 ZNF141Q15928 474 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 GLYR1Q49A26 553 aaPredicted RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 KLHL26Q53HC5 615 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 PAGE3Q5JUK9 113 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 GCNT6Q5T4J0 391 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 WLSQ5T9L3 541 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ENPP6Q6UWR7 440 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 Q6ZPB1 254 aaPredicted RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 EIF3MQ7L2H7 374 aaKnown RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 MARCH3Q86UD3 253 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 MTDHQ86UE4 582 aaKnown RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 SNX32Q86XE0 403 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 KRT73Q86Y46 540 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 SPPL2CQ8IUH8 684 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 SLC30A8Q8IWU4 369 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 PM20D2Q8IYS1 436 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 FADS6Q8N9I5 356 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 WDSUB1Q8N9V3 476 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 OR8J3Q8NGG0 315 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 OR4C3Q8NH37 302 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 OR14L1PQ8NHC6 308 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 NEIL3Q8TAT5 605 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 PRR7Q8TB68 274 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 PHOSPHO1Q8TCT1 267 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 DUSP19Q8WTR2 217 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 LRRC37BQ96QE4 947 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 CGREF1Q99674 301 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 PIGQQ9BRB3 760 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 OR2B2Q9GZK3 357 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 SAP130Q9H0E3 1048 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 DEFB127Q9H1M4 99 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 SERHL2Q9H4I8 314 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 A4GALTQ9NPC4 353 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 SLC52A3Q9NQ40 469 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.33□□□□□ -1.08
NUP54-207ENST00000508583 FAM53CQ9NYF3 392 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 TAS2R10Q9NYW0 307 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ACAD8Q9UKU7 415 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ZNF232Q9UNY5 417 aa8.33□□□□□ -1.08
NUP54-207ENST00000508583 ZNF407Q9C0G0 2248 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 TRBV5-3A0A0A0MS03 114 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 A0A0G2JPF8 293 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 A0A1B0GTH9 108 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 HNRNPCL2B2RXH8 293 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 HNRNPCL3B7ZW38 293 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 NPIPB9F8W1W9 429 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 MRASO14807 208 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 ZNF264O43296 627 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 EIF4E2O60573 245 aaKnown RBP8.32□□□□□ -1.08
NUP54-207ENST00000508583 HNRNPCL1O60812 293 aaKnown RBP8.32□□□□□ -1.08
NUP54-207ENST00000508583 SHOX2O60902 331 aaPredicted RBP8.32□□□□□ -1.08
NUP54-207ENST00000508583 WDR1O75083 606 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 PDE9AO76083 593 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 BCHEP06276 602 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 DBIP07108 87 aaKnown RBP8.32□□□□□ -1.08
NUP54-207ENST00000508583 HNRNPCL4P0DMR1 293 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 UBL4AP11441 157 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 ESRRAP11474 423 aaPredicted RBP8.32□□□□□ -1.08
NUP54-207ENST00000508583 ETFAP13804 333 aa8.32□□□□□ -1.08
NUP54-207ENST00000508583 GABRA1P14867 456 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms