RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 CDK15Q96Q40 435 aa14.63□□□□□ -0.07
VIM-208ENST00000497849 SDHAF3Q9NRP4 125 aa14.63□□□□□ -0.07
VIM-208ENST00000497849 FAIMQ9NVQ4 179 aa14.63□□□□□ -0.07
VIM-208ENST00000497849 TBK1Q9UHD2 729 aa14.63□□□□□ -0.07
VIM-208ENST00000497849 MCTS1Q9ULC4 181 aaKnown RBP14.63□□□□□ -0.07
VIM-208ENST00000497849 KCNS2Q9ULS6 477 aa14.63□□□□□ -0.07
VIM-208ENST00000497849 ACOT9Q9Y305 439 aa14.63□□□□□ -0.07
VIM-208ENST00000497849 TRIM49D1C9J1S8 452 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 BCAS2O75934 225 aaPredicted RBP14.62□□□□□ -0.07
VIM-208ENST00000497849 IL32P24001 234 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 PSPHP78330 225 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 MRPS22P82650 360 aaKnown RBP14.62□□□□□ -0.07
VIM-208ENST00000497849 GTF2H2Q13888 395 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 AGAP6Q5VW22 663 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 GTF2H2CQ6P1K8 395 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 TFAP2EQ6VUC0 442 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 PAGE2Q7Z2X7 111 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 EXOC3L1Q86VI1 746 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 CCDC116Q8IYX3 515 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 FAM168AQ92567 244 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 NPAS1Q99742 590 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 ADAM19Q9H013 955 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 VIPAS39Q9H9C1 493 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 NMRAL1Q9HBL8 299 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 AHSPQ9NZD4 102 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 ABCG2Q9UNQ0 655 aa14.62□□□□□ -0.07
VIM-208ENST00000497849 ADAMDEC1O15204 470 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 GUCY1B2O75343 617 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 OPN1LWP04000 364 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 USF1P22415 310 aaPredicted RBP14.61□□□□□ -0.07
VIM-208ENST00000497849 SERPINB9P50453 376 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 CDH11P55287 796 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 LSM11P83369 360 aaKnown RBP eCLIP14.61□□□□□ -0.07
VIM-208ENST00000497849 PSG6Q00889 435 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 GALNT1Q10472 559 aaPredicted RBP14.61□□□□□ -0.07
VIM-208ENST00000497849 PFKFB4Q16877 469 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 FAM166AQ6J272 317 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 RAPH1Q70E73 1250 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 NUFIP2Q7Z417 695 aaKnown RBP14.61□□□□□ -0.07
VIM-208ENST00000497849 COMMD6Q7Z4G1 85 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 MARCH3Q86UD3 253 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 OR9A2Q8NGT5 310 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 PROX1Q92786 737 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 ERP27Q96DN0 273 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 POTEKPQ9BYX7 375 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 PAQR5Q9NXK6 330 aaPredicted RBP14.61□□□□□ -0.07
VIM-208ENST00000497849 ZNF180Q9UJW8 692 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 PSME2Q9UL46 239 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 OR10H1Q9Y4A9 318 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 ZNF780BQ9Y6R6 833 aa14.61□□□□□ -0.07
VIM-208ENST00000497849 A0A1W2PPM1 405 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 OR7A17O14581 309 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 GMFGO60234 142 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 SYNGR4O95473 234 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 CLDN9O95484 217 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 ADAP00813 363 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 C2P06681 752 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 SNRPAP09012 282 aaKnown RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 LTA4HP09960 611 aaKnown RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 NUDT17P0C025 328 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 PYGBP11216 843 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 TYK2P29597 1187 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 TTKP33981 857 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 ALDH9A1P49189 494 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 GZMKP49863 264 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 IFFO1Q0D2I5 559 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 SQLEQ14534 574 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 P2RY6Q15077 328 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 FRG2Q64ET8 278 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 C12orf54Q6X4T0 127 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 BANPQ8N9N5 519 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 KISS1RQ969F8 398 aaPredicted RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 NXNL1Q96CM4 212 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 MSI2Q96DH6 328 aaKnown RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 ZIM3Q96PE6 472 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 FRG2BQ96QU4 278 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 VPS11Q9H270 941 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 EML4Q9HC35 981 aaKnown RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 CBLN4Q9NTU7 201 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 FAM120CQ9NX05 1096 aaKnown RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 PSMC3IPQ9P2W1 217 aaPredicted RBP14.6□□□□□ -0.07
VIM-208ENST00000497849 UTS2RQ9UKP6 389 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 VDAC3Q9Y277 283 aa14.6□□□□□ -0.07
VIM-208ENST00000497849 IGLV3-32A0A0A0MS00 114 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 A0A0J9YW62 118 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 LOC100289279A0A1B0GTE1 492 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 ABCD4O14678 606 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 TNFSF11O14788 317 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 SASH3O75995 380 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 ZNF17P17021 662 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 EGR1P18146 543 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 PSMA4P25789 261 aaKnown RBP14.59□□□□□ -0.07
VIM-208ENST00000497849 ALDH18A1P54886 795 aaKnown RBP14.59□□□□□ -0.07
VIM-208ENST00000497849 RAB35Q15286 201 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 WDR75Q8IWA0 830 aaKnown RBP14.59□□□□□ -0.07
VIM-208ENST00000497849 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.59□□□□□ -0.07
VIM-208ENST00000497849 OR7G2Q8NG99 324 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 OR2V1Q8NHB1 315 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 RHEBL1Q8TAI7 183 aa14.59□□□□□ -0.07
VIM-208ENST00000497849 ABHD3Q8WU67 409 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms