RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	AP2M1	Q96CW1	435 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	EPSTI1	Q96J88	318 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	TMEM117	Q9H0C3	514 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	DDX47	Q9H0S4	455 aa	Known RBP	4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	CXXC4	Q9H2H0	198 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	TMEM245	Q9H330	911 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	MAGEF1	Q9HAY2	307 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	IL1RL2	Q9HB29	575 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	ELL3	Q9HB65	397 aa	Predicted RBP	4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	ABCC13	Q9NSE7	274 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	ANAPC11	Q9NYG5	84 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	TAS2R16	Q9NYV7	291 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	SUN2	Q9UH99	717 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	ATP6V1H	Q9UI12	483 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	PSME2	Q9UL46	239 aa		4.08	□□□□□ -1.76
SF3B1-212	ENST00000496458	PPL	O60437	1756 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	LTBP4	Q8N2S1	1624 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	NEXMIF	Q5QGS0	1516 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	SPATA31E1	Q6ZUB1	1445 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ADAMTS13	Q76LX8	1427 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	MET	P08581	1390 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458		H0YHG0	523 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	SURF6	O75683	361 aa	Known RBP	4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	RHOBTB1	O94844	696 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	CD9	P21926	228 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	CALML3	P27482	149 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	MAGEA8	P43361	318 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ETV1	P50549	477 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	GALK2	Q01415	458 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	GABPA	Q06546	454 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZMYND11	Q15326	602 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZNF79	Q15937	498 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	DPYSL2	Q16555	572 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ANKRD55	Q3KP44	614 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	CCDC152	Q4G0S7	254 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	UNC50	Q53HI1	259 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ASPG	Q86U10	573 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	LRRC43	Q8N309	656 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	OR4F5	Q8NH21	305 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ANKRD7	Q92527	254 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	PNPLA2	Q96AD5	504 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	TPD52L3	Q96J77	140 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZBTB18	Q99592	522 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	GPA33	Q99795	319 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	AGPAT1	Q99943	283 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	NUSAP1	Q9BXS6	441 aa	Known RBP	4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	DEFB126	Q9BYW3	111 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	STMN4	Q9H169	189 aa	Predicted RBP	4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	FANCE	Q9HB96	536 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	KCNMB3	Q9NPA1	279 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZNF275	Q9NSD4	429 aa	Predicted RBP	4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	UTP6	Q9NYH9	597 aa	Known RBP	4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	NYAP2	Q9P242	653 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	TEKT2	Q9UIF3	430 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	ERVK-19	Q9WJR5	959 aa		4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	CHD2	O14647	1828 aa	Known RBP	4.07	□□□□□ -1.76
SF3B1-212	ENST00000496458	KLF18	A0A0U1RQI7	1052 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	GOLGA6L7	A0A1B0GV03	622 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	FAM149A	A5PLN7	773 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	KIF2A	O00139	706 aa	Predicted RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SAP18	O00422	153 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	CHAD	O15335	359 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SPOP	O43791	374 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	TOM1	O60784	492 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	TBX19	O60806	448 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	POLR2M	P0CAP2	368 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	PAX7	P23759	505 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	PTPN6	P29350	595 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	STIP1	P31948	543 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	CCR1	P32246	355 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	DRD3	P35462	400 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	HNRNPF	P52597	415 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SMS	P52788	366 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	PRRX1	P54821	245 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	TNFRSF17	Q02223	184 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SNTB2	Q13425	540 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	OR1C1	Q15619	314 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZSCAN26	Q16670	478 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	DLEU7	Q6UYE1	221 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	FAM184A	Q8NB25	1140 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	OR56B1	Q8NGI3	324 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	OR2T3	Q8NH03	318 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	GOLGA5	Q8TBA6	731 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SELENOM	Q8WWX9	145 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SLCO4A1	Q96BD0	722 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	TTC25	Q96NG3	672 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SIGLEC12	Q96PQ1	595 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SECISBP2	Q96T21	854 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	S1PR3	Q99500	378 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	PLIN2	Q99541	437 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	FAM213A	Q9BRX8	229 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZNF416	Q9BWM5	594 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	FARSB	Q9NSD9	589 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	ZNHIT6	Q9NWK9	470 aa	Known RBP	4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	SPACA6	W5XKT8	324 aa		4.06	□□□□□ -1.76
SF3B1-212	ENST00000496458	CPS1	P31327	1500 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	PTPRU	Q92729	1446 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	XIRP1	Q702N8	1843 aa	Known RBP	4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458		A0A1B0GUL7	405 aa		4.05	□□□□□ -1.76
SF3B1-212	ENST00000496458	MACROD2	A1Z1Q3	448 aa		4.05	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms