RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 MPIP34949 423 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 CARD18P57730 90 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 LSM11P83369 360 aaKnown RBP eCLIP14.34□□□□□ -0.11
USP48-210ENST00000489108 PRR5P85299 388 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 ITGADQ13349 1161 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 GGTA1PQ4G0N0 100 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 PDSS1Q5T2R2 415 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 CPTPQ5TA50 214 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 MROH9Q5TGP6 573 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 C11orf71Q6IPW1 123 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 BHLHA15Q7RTS1 189 aaPredicted RBP14.34□□□□□ -0.11
USP48-210ENST00000489108 SAMD14Q8IZD0 417 aaPredicted RBP14.34□□□□□ -0.11
USP48-210ENST00000489108 FAM9CQ8IZT9 166 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 GTPBP8Q8N3Z3 284 aaPredicted RBP14.34□□□□□ -0.11
USP48-210ENST00000489108 C10orf105Q8TEF2 133 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 RNF145Q96MT1 663 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 USB1Q9BQ65 265 aaKnown RBP14.34□□□□□ -0.11
USP48-210ENST00000489108 POTEKPQ9BYX7 375 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 BRF2Q9HAW0 419 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 GIMAP4Q9NUV9 329 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 KCNS2Q9ULS6 477 aa14.34□□□□□ -0.11
USP48-210ENST00000489108 PLCE1Q9P212 2302 aa14.33□□□□□ -0.11
USP48-210ENST00000489108 A0A087WZY1 265 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 ZNF814B7Z6K7 855 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 E7EQL1 145 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 ABCD4O14678 606 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 SPRY1O43609 319 aaPredicted RBP14.33□□□□□ -0.12
USP48-210ENST00000489108 COQ9O75208 318 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 PGRP06401 933 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 GSTA2P09210 222 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 COL6A2P12110 1019 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 TTKP33981 857 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 MRPS25P82663 173 aaKnown RBP14.33□□□□□ -0.12
USP48-210ENST00000489108 P2RY6Q15077 328 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 PPA1Q15181 289 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 STK11Q15831 433 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 GRAMD1BQ3KR37 738 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 FAM166AQ6J272 317 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 LETMD1Q6P1Q0 360 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 KLC3Q6P597 504 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 CCDC91Q7Z6B0 441 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 FBF1Q8TES7 1133 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 PROX1Q92786 737 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 BBS4Q96RK4 519 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 Q9N2J8 555 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 CBLN4Q9NTU7 201 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 NMRK1Q9NWW6 199 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 VPS29Q9UBQ0 182 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 RNF14Q9UBS8 474 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 DMGDHQ9UI17 866 aaKnown RBP14.33□□□□□ -0.12
USP48-210ENST00000489108 MCM8Q9UJA3 840 aa14.33□□□□□ -0.12
USP48-210ENST00000489108 MRTO4Q9UKD2 239 aaKnown RBP14.33□□□□□ -0.12
USP48-210ENST00000489108 DYSFO75923 2080 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 A0A096LPK6 155 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 A0A1W2PRB8 838 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 HMX2A2RU54 273 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 EIF3HO15372 352 aaKnown RBP eCLIP14.32□□□□□ -0.12
USP48-210ENST00000489108 IGKV1D-16P01601 117 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 PABPC4LP0CB38 370 aaKnown RBP14.32□□□□□ -0.12
USP48-210ENST00000489108 CHN1P15882 459 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 TSPAN8P19075 237 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 SHC1P29353 583 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 GZMKP49863 264 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 RAE1P78406 368 aaKnown RBP14.32□□□□□ -0.12
USP48-210ENST00000489108 PRSS53Q2L4Q9 553 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 TECRLQ5HYJ1 363 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 UBAP2Q5T6F2 1119 aaKnown RBP14.32□□□□□ -0.12
USP48-210ENST00000489108 PLD6Q8N2A8 252 aaKnown RBP14.32□□□□□ -0.12
USP48-210ENST00000489108 OR2W6PQ8NHA6 318 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 RNF128Q8TEB7 428 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 C1orf159Q96HA4 380 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 REXO5Q96IC2 774 aaKnown RBP14.32□□□□□ -0.12
USP48-210ENST00000489108 KLHDC3Q9BQ90 382 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 SRXN1Q9BYN0 137 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 MED17Q9NVC6 651 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 NPAP1Q9NZP6 1156 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 KLHL13Q9P2N7 655 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 SNX6Q9UNH7 406 aa14.32□□□□□ -0.12
USP48-210ENST00000489108 C19orf53Q9UNZ5 99 aaPredicted RBP14.32□□□□□ -0.12
USP48-210ENST00000489108 A0A087WV62 115 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 LOC100289279A0A1B0GTE1 492 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 GXYLT2A0PJZ3 443 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 STX16-NPEPL1H3BU86 382 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 UPK1AO00322 258 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 STX16O14662 325 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 LYZL6O75951 148 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 JUNP05412 331 aaKnown RBP14.31□□□□□ -0.12
USP48-210ENST00000489108 YES1P07947 543 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 TCP1P17987 556 aaKnown RBP14.31□□□□□ -0.12
USP48-210ENST00000489108 ME2P23368 584 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 GABRA3P34903 492 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 SFTPDP35247 375 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 PSMD4P55036 377 aaKnown RBP14.31□□□□□ -0.12
USP48-210ENST00000489108 CDH13P55290 713 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 SQLEQ14534 574 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 HEPACAMQ14CZ8 416 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 RNPS1Q15287 305 aaKnown RBP14.31□□□□□ -0.12
USP48-210ENST00000489108 ZNF239Q16600 458 aaKnown RBP14.31□□□□□ -0.12
USP48-210ENST00000489108 PLPPR5Q32ZL2 321 aa14.31□□□□□ -0.12
USP48-210ENST00000489108 TMEM107Q6UX40 140 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms