RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 KIR2DL2P43627 348 aaPredicted RBP12.7□□□□□ -0.38
UPF3A-204ENST00000475218 PRRC2AP48634 2157 aaKnown RBP12.7□□□□□ -0.38
UPF3A-204ENST00000475218 PSMD4P55036 377 aaKnown RBP12.7□□□□□ -0.38
UPF3A-204ENST00000475218 C17orf67Q0P5P2 114 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 GUSBP1Q15486 140 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 CD226Q15762 336 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 LRIG3Q6UXM1 1119 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 SZRD1Q7Z422 152 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 R3HCC1LQ7Z5L2 792 aaKnown RBP12.7□□□□□ -0.38
UPF3A-204ENST00000475218 C3orf14Q9HBI5 128 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 ZCCHC3Q9NUD5 404 aaKnown RBP12.7□□□□□ -0.38
UPF3A-204ENST00000475218 GPATCH2Q9NW75 528 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 RAB21Q9UL25 225 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 MTORP42345 2549 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 A0A1W2PRB8 838 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 TUBAL3A6NHL2 446 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 SLC22A20A6NK97 555 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 TMEM114B3SHH9 223 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 H3BML4 177 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 SEC14L5O43304 696 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 OIP5O43482 229 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 C6orf47O95873 294 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 G6PDP11413 515 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 HPCAL1P37235 193 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 LASP1Q14847 261 aaKnown RBP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 KRT71Q3SY84 523 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 GLYR1Q49A26 553 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 VPS26BQ4G0F5 336 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ATP6AP1LQ52LC2 224 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ZCCHC12Q6PEW1 402 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 BTLAQ7Z6A9 289 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF781Q8N8C0 355 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 FNDC5Q8NAU1 212 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 FNDC9Q8TBE3 224 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 CDS1Q92903 461 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF524Q96C55 264 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ADGRG7Q96K78 797 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 SORT1Q99523 831 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 SERHL2Q9H4I8 314 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 RNF122Q9H9V4 155 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ST6GALNAC2Q9UJ37 374 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 PACSIN3Q9UKS6 424 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 SETD2Q9BYW2 2564 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 WDR91A4D1P6 747 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 TNFRSF21O75509 655 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 AQP8O94778 261 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 CGAP01215 116 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ALOX5P09917 674 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 CCKARP32238 428 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 SLC6A8P48029 635 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ART1P52961 327 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 C21orf58P58505 322 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 CTU2Q2VPK5 515 aaKnown RBP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 PLPPR5Q32ZL2 321 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF474Q6S9Z5 364 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 KIF18BQ86Y91 864 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 NUDCD3Q8IVD9 361 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 METTL25Q8N6Q8 603 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 POC1BQ8TC44 478 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 OR5P2Q8WZ92 322 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 TUBGCP3Q96CW5 907 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 PIGQQ9BRB3 760 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 BTBD2Q9BX70 525 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 PINK1Q9BXM7 581 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 CXXC4Q9H2H0 198 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 PIGUQ9H490 435 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 PTGES2Q9H7Z7 377 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 DUSP22Q9NRW4 184 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 CCM2LQ9NUG4 571 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-204ENST00000475218 VDAC3Q9Y277 283 aa12.69□□□□□ -0.38
UPF3A-204ENST00000475218 NPIPA5A0A0B4J1W7 369 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 NPIPA7E9PJI5 369 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 NDUFB5O43674 189 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 NPIPA8P0DM63 369 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 IL11P20809 199 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 MAPK1P28482 360 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 CLK3P49761 638 aaKnown RBP12.68□□□□□ -0.38
UPF3A-204ENST00000475218 RNF144AP50876 292 aaPredicted RBP12.68□□□□□ -0.38
UPF3A-204ENST00000475218 HBA1P69905 142 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 CHI3L2Q15782 390 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 CPTPQ5TA50 214 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 CDC73Q6P1J9 531 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 CAMKMTQ7Z624 323 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 MEIOBQ8N635 442 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 COX18Q8N8Q8 333 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 GOT1L1Q8NHS2 421 aaPredicted RBP12.68□□□□□ -0.38
UPF3A-204ENST00000475218 DTNBP1Q96EV8 351 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 LRRC46Q96FV0 321 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 STACQ99469 402 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 PIGMQ9H3S5 423 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 PLEKHF2Q9H8W4 249 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 SSU72Q9NP77 194 aaKnown RBP12.68□□□□□ -0.38
UPF3A-204ENST00000475218 UBQLN4Q9NRR5 601 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 MED17Q9NVC6 651 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 ASIC5Q9NY37 505 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 SNX8Q9Y5X2 465 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 AP4B1Q9Y6B7 739 aa12.68□□□□□ -0.38
UPF3A-204ENST00000475218 C7orf72A4D263 438 aa12.67□□□□□ -0.38
UPF3A-204ENST00000475218 NPIPB9F8W1W9 429 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms