RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ZNF678Q5SXM1 525 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ATG9BQ674R7 924 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GRAMD2AQ8IUY3 354 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PAAF1Q9BRP4 392 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SLC39A9Q9NUM3 307 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM45AQ9NWC5 275 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TESQ9UGI8 421 aaKnown RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ARHGAP23Q9P227 1491 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 C17orf105B2RV13 164 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 IQCF3P0C7M6 154 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 OR4K3Q96R72 315 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SYT3Q9BQG1 590 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RDH14Q9HBH5 336 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RABL2AQ9UBK7 228 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AJAP1Q9UKB5 411 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SLITRK5O94991 958 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF728P0DKX0 622 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TUBA3EQ6PEY2 450 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HS3ST5Q8IZT8 346 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 EID2Q8N6I1 236 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 BPIFCQ8NFQ6 507 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CMASQ8NFW8 434 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 KCND1Q9NSA2 647 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HCFC1R1Q9NWW0 138 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM184BQ9Y519 407 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF217O75362 1048 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SIRPAP78324 504 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PTP4A2Q12974 167 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF829Q3KNS6 432 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TSPAN33Q86UF1 283 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SERPINA12Q8IW75 414 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ASCC1Q8N9N2 400 aaKnown RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 UBQLN2Q9UHD9 624 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NPIPA5A0A0B4J1W7 369 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 OR52A4PA6NMU1 304 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NPIPA7E9PJI5 369 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NPIPA8P0DM63 369 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SGSHP51688 502 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 EMP2P54851 167 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 F2RL1P55085 397 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 UPP1Q16831 310 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM205Q6UW68 189 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RNF175Q8N4F7 328 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 DDX1Q92499 740 aaKnown RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 C1orf226A1L170 272 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 INMT-MINDY4F8WBC2 141 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GOSR2O14653 212 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ACTA2P62736 377 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ACTG2P63267 376 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TGFBR3Q03167 851 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NDUFAF5Q5TEU4 345 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 LYSMD4Q5XG99 296 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TINAGL1Q9GZM7 467 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 FAM86C1Q9NVL1 165 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TEX10Q9NXF1 929 aaPredicted RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GABARAPH6UMI1 98 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GABARAPO95166 117 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GSTP1P09211 210 aaKnown RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 BDKRB2P30411 391 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HLA-FP30511 346 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 STT3BQ8TCJ2 826 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MITD1Q8WV92 249 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZDHHC16Q969W1 377 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MRI1Q9BV20 369 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NUDT9Q9BW91 350 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PTTG2Q9NZH5 202 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PTBP2Q9UKA9 531 aaKnown RBP12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 OARD1Q9Y530 152 aa12.53□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TRAF3IP2O43734 574 aaPredicted RBP12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TIA1P31483 386 aaKnown RBP eCLIP12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CCL11P51671 97 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MSS51Q4VC12 460 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CST9LP1Q5W188 147 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MRPL38Q96DV4 380 aaKnown RBP12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PBDC1Q9BVG4 233 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ALOXE3Q9BYJ1 711 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TRBV11-1A0A0K0K1C0 115 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 DVL2O14641 736 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RFPL1O75677 317 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NKX6-1P78426 367 aaPredicted RBP12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF251Q9BRH9 671 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ACKR4Q9NPB9 350 aa12.52□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 STSP08842 583 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 ZNF182P17025 639 aaPredicted RBP12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 C5AR1P21730 350 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RAB7AP51149 207 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 OR5AK2Q8NH90 309 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 IGSF8Q969P0 613 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 GPR22Q99680 433 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RTP3Q9BQQ7 232 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RABL2BQ9UNT1 228 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RNASEK-C17orf49H0YIS7 233 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 RGS9O75916 674 aaPredicted RBP12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LRRC57Q8N9N7 239 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 SCRN2Q96FV2 425 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 HS6ST2Q96MM7 605 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 LGALS13Q9UHV8 139 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PEAK1Q9H792 1746 aa12.52□□□□□ -0.41
NPHP3-ACAD11-201ENST00000471702 PCDH17O14917 1159 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms