RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SIRT3Q9NTG7 399 aaPredicted RBP11.11□□□□□ -0.63
MSH6-204ENST00000445503 BABAM2Q9NXR7 383 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 ACSL5Q9ULC5 683 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 LIPT1Q9Y234 373 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 OR10H1Q9Y4A9 318 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 FAM171A2A8MVW0 826 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 PLA2G10O15496 165 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 RCBTB2O95199 551 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 RLN1P04808 185 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 MSL3P1P0C860 447 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 PRKCAP17252 672 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 EDNRAP25101 427 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 RRAS2P62070 204 aaPredicted RBP11.11□□□□□ -0.63
MSH6-204ENST00000445503 ZNF770Q6IQ21 691 aaPredicted RBP11.11□□□□□ -0.63
MSH6-204ENST00000445503 QSOX2Q6ZRP7 698 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 OAFQ86UD1 273 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 OR4K14Q8NGD5 310 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 OR52E1Q8NGJ3 308 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 OR8D4Q8NGM9 314 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 OR4K13Q8NH42 304 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 CHAC2Q8WUX2 184 aa11.11□□□□□ -0.63
MSH6-204ENST00000445503 ZMYND19Q96E35 227 aaPredicted RBP11.11□□□□□ -0.63
MSH6-204ENST00000445503 PPIEQ9UNP9 301 aaKnown RBP11.11□□□□□ -0.63
MSH6-204ENST00000445503 AK6Q9Y3D8 172 aaKnown RBP11.11□□□□□ -0.63
MSH6-204ENST00000445503 LRIT2A6NDA9 550 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 GTPBP1O00178 669 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 CLEC3AO75596 197 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 TSPAN9O75954 239 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 PPP1R3DO95685 299 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 LIMS3P0CW19 117 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 LIMS4P0CW20 117 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 GABRA3P34903 492 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 OR10A3P58181 314 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 OTUB2Q96DC9 234 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 CNRIP1Q96F85 164 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 PAWRQ96IZ0 340 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 C4orf36Q96KX1 117 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 ACTRT3Q9BYD9 372 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 IKZF2Q9UKS7 526 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 TRDV1A0A1B0GX56 115 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 ARRDC5A6NEK1 342 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 CASC3O15234 703 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 B3GALT2O43825 422 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 B4GALT2O60909 372 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 ALX3O95076 343 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 LALBAP00709 142 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 POLR2CP19387 275 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 ATP5A1P25705 553 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 MLLT3P42568 568 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 PITPNBP48739 271 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 REEP5Q00765 189 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 SNTB2Q13425 540 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 DOC2BQ14184 412 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 PDGFRLQ15198 375 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 POU4F3Q15319 338 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 PUS10Q3MIT2 529 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 C1orf94Q6P1W5 598 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 CHMP1BQ7LBR1 199 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 KIF18BQ86Y91 864 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 TP53I13Q8NBR0 393 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 ERMAPQ96PL5 475 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 TMEM138Q9NPI0 162 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 MBNL1Q9NR56 388 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 KCND3Q9UK17 655 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 PCYT1BQ9Y5K3 369 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 COLEC10Q9Y6Z7 277 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 TMEM129A0AVI4 362 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 GRXCR1A8MXD5 290 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 LDB3O75112 727 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 ZNF888P0CJ79 500 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 SNRPBP14678 240 aaKnown RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 ZNF3P17036 446 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 EVX1P49640 407 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 GPLD1P80108 840 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 TPBGQ13641 420 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 TMEM35AQ53FP2 167 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 RASSF6Q6ZTQ3 369 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 ESPNLQ6ZVH7 1005 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 GDF7Q7Z4P5 450 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 LRRC25Q8N386 305 aaPredicted RBP11.1□□□□□ -0.63
MSH6-204ENST00000445503 TMEM99Q8N816 258 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 OR13C2Q8NGS9 318 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 CHFRQ96EP1 664 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 MSANTD3Q96H12 275 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 HHIPQ96QV1 700 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 GON7Q9BXV9 100 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 EPHX3Q9H6B9 360 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 ICKQ9UPZ9 632 aa11.1□□□□□ -0.63
MSH6-204ENST00000445503 A0A0B4J203 849 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 SEMA7AO75326 666 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 CRYZL1O95825 349 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 MT-ND4P03905 459 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ZNF10P21506 573 aaPredicted RBP11.09□□□□□ -0.63
MSH6-204ENST00000445503 SOX2P48431 317 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 EPHA5P54756 1037 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 HTRA3P83110 453 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 EFR3AQ14156 821 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 ARMC6Q6NXE6 501 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 LYPD8Q6UX82 237 aa11.09□□□□□ -0.63
MSH6-204ENST00000445503 KIAA1324Q6UXG2 1013 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms