RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 C7orf57Q8NEG2 295 aa10□□□□□ -0.81
USP54-204ENST00000422491 OR5W2Q8NH69 310 aa10□□□□□ -0.81
USP54-204ENST00000422491 SMIM4Q8WVI0 70 aa10□□□□□ -0.81
USP54-204ENST00000422491 XAGE5Q8WWM1 108 aa10□□□□□ -0.81
USP54-204ENST00000422491 ATOH1Q92858 354 aaPredicted RBP10□□□□□ -0.81
USP54-204ENST00000422491 RGMAQ96B86 450 aa10□□□□□ -0.81
USP54-204ENST00000422491 PARK7Q99497 189 aaKnown RBP10□□□□□ -0.81
USP54-204ENST00000422491 GSDMCQ9BYG8 508 aa10□□□□□ -0.81
USP54-204ENST00000422491 ZCCHC4Q9H5U6 513 aa10□□□□□ -0.81
USP54-204ENST00000422491 NANSQ9NR45 359 aa10□□□□□ -0.81
USP54-204ENST00000422491 FBXL2Q9UKC9 423 aa10□□□□□ -0.81
USP54-204ENST00000422491 CLEC4EQ9ULY5 219 aa10□□□□□ -0.81
USP54-204ENST00000422491 DYRK1BQ9Y463 629 aa10□□□□□ -0.81
USP54-204ENST00000422491 E9PI62 339 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 PLPP1O14494 284 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CTDSPLO15194 276 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 PLPP2O43688 288 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 DUSP11O75319 330 aaKnown RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 PTP4A3O75365 173 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 C1orf105O95561 183 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 TBX6O95947 436 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 GIPP09681 153 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 NAT2P11245 290 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CD53P19397 219 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 GDNFP39905 211 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CCR8P51685 355 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SMAD3P84022 425 aaKnown RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 CAMK1Q14012 370 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 GNA13Q14344 377 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 METTL11BQ5VVY1 283 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CDC73Q6P1J9 531 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 ARL9Q6T311 187 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 PRSS55Q6UWB4 352 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 NXPE4Q6UWF7 544 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 C17orf107Q6ZR85 190 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SLC24A5Q71RS6 500 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 PRSS45Q7RTY3 260 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CEACAM19Q7Z692 300 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 OR1S1Q8NH92 325 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 OSTF1Q92882 214 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 TM4SF18Q96CE8 201 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SLC6A17Q9H1V8 727 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 TRIM36Q9NQ86 728 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 MGAT4CQ9UBM8 478 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 GPR160Q9UJ42 338 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CAMK2AQ9UQM7 478 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 NPFFR2Q9Y5X5 522 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 A0A0B4J203 849 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 OR2M5A3KFT3 312 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 ZNF98A6NK75 572 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 FAM183AA6NL82 134 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 ANXA2P2A6NMY6 339 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 TEX46H3BTG2 121 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 ABCD4O14678 606 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 BNIP3LO60238 219 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SUSD5O60279 629 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 LATS1O95835 1130 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SERPIND1P05546 499 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CHRM4P08173 479 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 AKR1A1P14550 325 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SNRPBP14678 240 aaKnown RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 CPN1P15169 458 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 ATF1P18846 271 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 VIPR1P32241 457 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 BUD31P41223 144 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 ERVFC1P60507 584 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 FLI1Q01543 452 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 FUT5Q11128 374 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 HTR4Q13639 388 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SFRP4Q6FHJ7 346 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 FUT10Q6P4F1 479 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 CPOQ8IVL8 374 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 TMEM99Q8N816 258 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 ABHD4Q8TB40 342 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SLC5A11Q8WWX8 675 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 WDR89Q96FK6 387 aaPredicted RBP9.99□□□□□ -0.81
USP54-204ENST00000422491 PPP1R16AQ96I34 528 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 SCPEP1Q9HB40 452 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 BCL2L10Q9HD36 194 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 KLHL1Q9NR64 748 aa9.99□□□□□ -0.81
USP54-204ENST00000422491 GLTPD2A6NH11 291 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 PGRMC2O15173 223 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 SEPT4O43236 478 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 SNAPC5O75971 98 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 OR2A4O95047 310 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 CTSAP10619 480 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 PSMB1P20618 241 aaKnown RBP9.98□□□□□ -0.81
USP54-204ENST00000422491 FPR3P25089 353 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 PPP2R1BP30154 601 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 CTSOP43234 321 aaPredicted RBP9.98□□□□□ -0.81
USP54-204ENST00000422491 CCR9P51686 369 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 TAS2R41P59536 307 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 SNRPD1P62314 119 aaKnown RBP9.98□□□□□ -0.81
USP54-204ENST00000422491 LMAN2Q12907 356 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 FAM69AQ5T7M9 428 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 TAS1R1Q7RTX1 841 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 RASGEF1AQ8N9B8 481 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 C17orf47Q8NEP4 570 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 BBS10Q8TAM1 723 aa9.98□□□□□ -0.81
USP54-204ENST00000422491 SORCS1Q8WY21 1168 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms