RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 PRR14Q9BWN1 585 aa20.04■□□□□ 0.8
TRIM54-202ENST00000380075 C6orf62Q9GZU0 229 aaPredicted RBP20.04■□□□□ 0.8
TRIM54-202ENST00000380075 NDUFB11Q9NX14 153 aa20.04■□□□□ 0.8
TRIM54-202ENST00000380075 IL20Q9NYY1 176 aa20.04■□□□□ 0.8
TRIM54-202ENST00000380075 CLEC2DQ9UHP7 191 aa20.04■□□□□ 0.8
TRIM54-202ENST00000380075 FUOMA2VDF0 154 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 ZNF860A6NHJ4 632 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 KLF4O43474 513 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 HNRNPCP07910 306 aaKnown RBP eCLIP20.03■□□□□ 0.8
TRIM54-202ENST00000380075 CKMT1AP12532 417 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 MYL12AP19105 171 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 NT5EP21589 574 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 RAB38P57729 211 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 FAM46AQ96IP4 442 aaKnown RBP20.03■□□□□ 0.8
TRIM54-202ENST00000380075 LOXL4Q96JB6 756 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 SEMA6CQ9H3T2 930 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 ADAP2Q9NPF8 381 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 CHCHD3Q9NX63 227 aaKnown RBP20.03■□□□□ 0.8
TRIM54-202ENST00000380075 POMT2Q9UKY4 750 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 STUB1Q9UNE7 303 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 KDM4EB2RXH2 506 aaPredicted RBP20.03■□□□□ 0.8
TRIM54-202ENST00000380075 BCAP31P51572 246 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 SHC2P98077 582 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 HHEXQ03014 270 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 PRICKLE4Q2TBC4 344 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 BCDIN3DQ7Z5W3 292 aaKnown RBP20.03■□□□□ 0.8
TRIM54-202ENST00000380075 COX18Q8N8Q8 333 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 OR8D4Q8NGM9 314 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 RFKQ969G6 155 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 ARRDC1-AS1Q9H2J1 176 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 ISYNA1Q9NPH2 558 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 CNIH4Q9P003 139 aa20.03■□□□□ 0.8
TRIM54-202ENST00000380075 EXOSC1Q9Y3B2 195 aaKnown RBP20.03■□□□□ 0.8
TRIM54-202ENST00000380075 SPAG17Q6Q759 2223 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 PNMA8CA0A1B0GUJ8 204 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 BCAT2O15382 392 aaPredicted RBP20.02■□□□□ 0.8
TRIM54-202ENST00000380075 FMO6PO60774 539 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 GPX5O75715 221 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 NID1P14543 1247 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 MAP3K8P41279 467 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 RACK1P63244 317 aaKnown RBP20.02■□□□□ 0.8
TRIM54-202ENST00000380075 NHLH1Q02575 133 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 SOWAHCQ53LP3 525 aaPredicted RBP20.02■□□□□ 0.8
TRIM54-202ENST00000380075 PRSS41Q7RTY9 318 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 NKAIN4Q8IVV8 208 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 AVL9Q8NBF6 648 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 RNF167Q9H6Y7 350 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 MAT2BQ9NZL9 334 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 UGT2A1Q9Y4X1 527 aa20.02■□□□□ 0.8
TRIM54-202ENST00000380075 CEP192Q8TEP8 1941 aa20.02■□□□□ 0.79
TRIM54-202ENST00000380075 A0A075B6Q4 140 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 TMEM129A0AVI4 362 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 LDB3O75112 727 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 HBQ1P09105 142 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ETV6P41212 452 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ZNF136P52737 540 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 VSX2P58304 361 aaPredicted RBP20.01■□□□□ 0.79
TRIM54-202ENST00000380075 IFITM3Q01628 133 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ZNF181Q2M3W8 571 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 PERM1Q5SV97 790 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 PEAR1Q5VY43 1037 aaPredicted RBP20.01■□□□□ 0.79
TRIM54-202ENST00000380075 PARGQ86W56 976 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 RNF113BQ8IZP6 322 aaKnown RBP20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ANKK1Q8NFD2 765 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 CTHRC1Q96CG8 243 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 CRNNQ9UBG3 495 aaPredicted RBP20.01■□□□□ 0.79
TRIM54-202ENST00000380075 TRAPPC13A5PLN9 417 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 COQ9O75208 318 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 UPK1BO75841 260 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 THY1P04216 161 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 WNT1P04628 370 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 GUSBP08236 651 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 MTNR1AP48039 350 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 CSNK1EP49674 416 aaKnown RBP20.01■□□□□ 0.79
TRIM54-202ENST00000380075 PSMD7P51665 324 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 GAS1P54826 345 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 SKP1P63208 163 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ID2Q02363 134 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 GPR68Q15743 365 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ZNF620Q6ZNG0 422 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 PLEKHG7Q6ZR37 379 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 NRMQ8IXM6 262 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 SIMC1Q8NDZ2 872 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 ZDHHC1Q8WTX9 485 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 RNFT2Q96EX2 444 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 KLHDC7BQ96G42 594 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 KLHL3Q9UH77 587 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 CDH10Q9Y6N8 788 aa20.01■□□□□ 0.79
TRIM54-202ENST00000380075 PATE3B3GLJ2 98 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 MED26O95402 600 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 HMGN1P05114 100 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 CELA2BP08218 269 aaPredicted RBP20■□□□□ 0.79
TRIM54-202ENST00000380075 SLC35E2P0CK97 266 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 GNSP15586 552 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 CDH3P22223 829 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 HOXC5Q00444 222 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 MGAT2Q10469 447 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 POGLUT1Q8NBL1 392 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 TMEM52Q8NDY8 209 aa20■□□□□ 0.79
TRIM54-202ENST00000380075 OR5T3Q8NGG3 340 aa20■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms