RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 OR1D4P47884 311 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CNTN2Q02246 1040 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SNTB2Q13425 540 aaKnown RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 TAF7Q15545 349 aaPredicted RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CAMK4Q16566 473 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 NADK2Q4G0N4 442 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CYBRD1Q53TN4 286 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SCYL2Q6P3W7 929 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF600Q6ZNG1 722 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 DPY19L4Q7Z388 723 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ERICH1Q86X53 443 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 HSCBQ8IWL3 235 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 IPMKQ8NFU5 416 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 OR5AU1Q8NGC0 362 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CNIH3Q8TBE1 160 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 NUS1Q96E22 293 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 VPS39Q96JC1 886 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 AKR1E2Q96JD6 320 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 APOL2Q9BQE5 337 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 POLR3FQ9H1D9 316 aaPredicted RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 FARSBQ9NSD9 589 aaKnown RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 IMPAD1Q9NX62 359 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ELOVL2Q9NXB9 296 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 TMCC3Q9ULS5 477 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CARMIL1Q5VZK9 1371 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SF3B1O75533 1304 aaKnown RBP eCLIP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 G3V3Y1 287 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CPLX1O14810 134 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 IDH1O75874 414 aaKnown RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 UFL1O94874 794 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 LAMP1P11279 417 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 HNRNPA2B1P22626 353 aaKnown RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 IGFBP5P24593 272 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 PSMA5P28066 241 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 HTR2AP28223 471 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ALDH3B2P48448 385 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 IFNAR2P48551 515 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 HLCSP50747 726 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 PAX2Q02962 417 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 PUDPQ08623 228 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SLC36A3Q495N2 470 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 LGSNQ5TDP6 509 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ZNF57Q68EA5 555 aaPredicted RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 BLOC1S2Q6QNY1 142 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CES3Q6UWW8 571 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 TMEM184AQ6ZMB5 413 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 LRRC70Q7Z2Q7 622 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 HSD11B1LQ7Z5J1 315 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ZDHHC21Q8IVQ6 265 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 GMCL1P1Q8NEA9 526 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 NANPQ8TBE9 248 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 M1APQ8TC57 530 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 TTC25Q96NG3 672 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CASD1Q96PB1 797 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 CCT8L2Q96SF2 557 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 ERP44Q9BS26 406 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 HCAR1Q9BXC0 346 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 RAB33BQ9H082 229 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 TMEM117Q9H0C3 514 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 POLD4Q9HCU8 107 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SLC2A6Q9UGQ3 507 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 SNX6Q9UNH7 406 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 RNF6Q9Y252 685 aa1.57□□□□□ -2.16
VPS13A-206ENST00000376646 EIF3LQ9Y262 564 aaKnown RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 COL4A4P53420 1690 aaPredicted RBP1.57□□□□□ -2.16
VPS13A-206ENST00000376646 USP6P35125 1406 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 POGZQ7Z3K3 1410 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 A8MX80 341 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 XPO1O14980 1071 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ANGPT2O15123 496 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 STX7O15400 261 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 OR1F1O43749 312 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 EFNA2O43921 213 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 NEBLO76041 1014 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 NOL4O94818 638 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 MFN2O95140 757 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 PRB2P02812 416 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 SLC35E2P0CK97 266 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 PTBP1P26599 531 aaKnown RBP eCLIP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CDH5P33151 784 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CA8P35219 290 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 BDKRB1P46663 353 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 EMDP50402 254 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 NTHL1P78549 312 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 RGS1Q08116 209 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 TIMM50Q3ZCQ8 353 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ANKDD1AQ495B1 522 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 CELF3Q5SZQ8 465 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 MEDAGQ5VYS4 303 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 STAC2Q6ZMT1 411 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 BPIFB2Q8N4F0 458 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ARL6IP6Q8N6S5 226 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 Q8N9G6 341 aaPredicted RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 PNPT1Q8TCS8 783 aaKnown RBP1.56□□□□□ -2.16
VPS13A-206ENST00000376646 VN1R17PQ8TDU5 208 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 ADAMTS16Q8TE57 1224 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 OSTF1Q92882 214 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 PPP1R16AQ96I34 528 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 TM2D1Q9BX74 207 aa1.56□□□□□ -2.16
VPS13A-206ENST00000376646 LCE3DQ9BYE3 92 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms