RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 METAP1P53582 386 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 PLA2G16P53816 162 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 SELENOWP63302 87 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 CSNK2BP67870 215 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 SLC35A2P78381 396 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 KCNJ10P78508 379 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 HSF1Q00613 529 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 REEP5Q00765 189 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 IL5RAQ01344 420 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 EEF1A2Q05639 463 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 PPP1R8Q12972 351 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 RAPSNQ13702 412 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 ZNF234Q14588 700 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 MAD2L1BPQ15013 274 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 MOGQ16653 247 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 ZNF630Q2M218 657 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 ZNF829Q3KNS6 432 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 POM121L1PQ3SYA9 428 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 ZNF260Q3ZCT1 412 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 IFI44LQ53G44 452 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 FGD3Q5JSP0 725 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 JMJD6Q6NYC1 403 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 TRIM40Q6P9F5 258 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 TMIGD1Q6UXZ0 262 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 TRMT11Q7Z4G4 463 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 VTCN1Q7Z7D3 282 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 TRIM74Q86UV6 250 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 ANKRD13BQ86YJ7 626 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 NRACQ8N912 160 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 TTC29Q8NA56 475 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 OR4C15Q8NGM1 316 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 B4GALNT2Q8NHY0 566 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 MBD3L2Q8NHZ7 208 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 STT3BQ8TCJ2 826 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 CXorf40AQ8TE69 158 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 FAR1Q8WVX9 515 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 ASB12Q8WXK4 309 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 SMARCD2Q92925 531 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 BORCS5Q969J3 196 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 PPCDCQ96CD2 204 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 ZNF347Q96SE7 839 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 BARD1Q99728 777 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 PSD2Q9BQI7 771 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 NUDT16L1Q9BRJ7 211 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 SLC35A5Q9BS91 424 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 WACQ9BTA9 647 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 DCUN1D5Q9BTE7 237 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 MS4A8Q9BY19 250 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 NAA50Q9GZZ1 169 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 LHPPQ9H008 270 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 PCBD2Q9H0N5 130 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 LMAN2LQ9H0V9 348 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 SPNS1Q9H2V7 528 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 RIBC2Q9H4K1 309 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 EPS8L2Q9H6S3 715 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 NT5DC2Q9H857 520 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 TRPV4Q9HBA0 871 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 DYRK4Q9NR20 520 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 KRT84Q9NSB2 600 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 PAK1IP1Q9NWT1 392 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 THUMPD1Q9NXG2 353 aaKnown RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 SCN3BQ9NY72 215 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 AHSPQ9NZD4 102 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 PDP1Q9P0J1 537 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 KIF17Q9P2E2 1029 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 FAF1Q9UNN5 650 aaPredicted RBP4.48□□□□□ -1.69
USP48-202ENST00000374730 ICKQ9UPZ9 632 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 TPRKBQ9Y3C4 175 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 GMPPBQ9Y5P6 360 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 LYVE1Q9Y5Y7 322 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 U3KQV3 271 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 DOCK9Q9BZ29 2069 aa4.48□□□□□ -1.69
USP48-202ENST00000374730 MDC1Q14676 2089 aaKnown RBP4.47□□□□□ -1.69
USP48-202ENST00000374730 SH3PXD2BA1X283 911 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 ARRDC5A6NEK1 342 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 A6NLC8 198 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 HEPACAM2A8MVW5 462 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 ZNF99A8MXY4 864 aaPredicted RBP4.47□□□□□ -1.69
USP48-202ENST00000374730 MYO1GB0I1T2 1018 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 TMX2-CTNND1H3BSU7 103 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 CACNB4O00305 520 aaPredicted RBP4.47□□□□□ -1.69
USP48-202ENST00000374730 SLC22A1O15245 554 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 PLOD3O60568 738 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 GCM2O75603 506 aaPredicted RBP4.47□□□□□ -1.69
USP48-202ENST00000374730 DIRAS1O95057 198 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 C6orf47O95873 294 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 BCL10O95999 233 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 IFNA14P01570 189 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 IL3P08700 152 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 CKMT1AP12532 417 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 HLA-EP13747 358 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 ANXA8P13928 327 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 PRF1P14222 555 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 ITGA2P17301 1181 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 FCARP24071 287 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 CXCR2P25025 360 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 TACR3P29371 465 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 RRM2P31350 389 aa4.47□□□□□ -1.69
USP48-202ENST00000374730 EIF2DP41214 584 aaKnown RBP4.47□□□□□ -1.69
USP48-202ENST00000374730 P2RY2P41231 377 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms