RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 KRTAP24-1Q3LI83 254 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 HBMQ6B0K9 141 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 MFSD12Q6NUT3 480 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 CLEC2AQ6UVW9 174 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 DTX2Q86UW9 622 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 CTAGE4Q8IX94 777 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 GABRG1Q8N1C3 465 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 KBTBD8Q8NFY9 601 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 PIWIL2Q8TC59 973 aaKnown RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 ZNF483Q8TF39 744 aaPredicted RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 NEUROG1Q92886 237 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 KISS1RQ969F8 398 aaPredicted RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 ADAD1Q96M93 576 aaKnown RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 TNFRSF13CQ96RJ3 184 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 HBEGFQ99075 208 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 POTEKPQ9BYX7 375 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 TRIM2Q9C040 744 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 TIGARQ9NQ88 270 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 DDX18Q9NVP1 670 aaKnown RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 CISD1Q9NZ45 108 aaKnown RBP12.33□□□□□ -0.44
VPS29-201ENST00000360579 GRHL1Q9NZI5 618 aa12.33□□□□□ -0.44
VPS29-201ENST00000360579 MYO1GB0I1T2 1018 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 TNFSF11O14788 317 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 GMFGO60234 142 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 GPRIN2O60269 458 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 NDUFS7O75251 213 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 UTS2O95399 124 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 PSMG1O95456 288 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 RFX3P48380 749 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 NCBP2P52298 156 aaKnown RBP eCLIP12.32□□□□□ -0.44
VPS29-201ENST00000360579 NUDT6P53370 316 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 PLTPP55058 493 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 MRPS25P82663 173 aaKnown RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 VLDLRP98155 873 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 LOXL1Q08397 574 aaPredicted RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 ACSM2AQ08AH3 577 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 UAP1Q16222 522 aaPredicted RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 CPTPQ5TA50 214 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 AGAP6Q5VW22 663 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 ACSM2BQ68CK6 577 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 TFAP2EQ6VUC0 442 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 PLD6Q8N2A8 252 aaKnown RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 OR2L13Q8N349 312 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 ACTRT2Q8TDY3 377 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 C16orf78Q8WTQ4 265 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 ROBO4Q8WZ75 1007 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 MRRFQ96E11 262 aaKnown RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 NAPGQ99747 312 aaPredicted RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 C1QTNF3Q9BXJ4 246 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 SHARPINQ9H0F6 387 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 GP6Q9HCN6 339 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 GDF2Q9UK05 429 aaPredicted RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 GRID1Q9ULK0 1009 aa12.32□□□□□ -0.44
VPS29-201ENST00000360579 UTP11Q9Y3A2 253 aaKnown RBP12.32□□□□□ -0.44
VPS29-201ENST00000360579 IGHV4-30-2A0A087WSY4 118 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 FAM234BA2RU67 622 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 UPK1AO00322 258 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 MANBAO00462 879 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 PPP6CO00743 305 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 NDUFB5O43674 189 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 ULK1O75385 1050 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 CD8AP01732 235 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 JUNP05412 331 aaKnown RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 COL6A2P12110 1019 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 SLC25A16P16260 332 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 DDCP20711 480 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 TIA1P31483 386 aaKnown RBP eCLIP12.31□□□□□ -0.44
VPS29-201ENST00000360579 ZNF41P51814 821 aaPredicted RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 CASP9P55211 416 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 CDH13P55290 713 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 CARD18P57730 90 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 RAE1P78406 368 aaKnown RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 ITGADQ13349 1161 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 RASA2Q15283 850 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 TCHHL1Q5QJ38 904 aaPredicted RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 GALNT18Q6P9A2 607 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 TMEM107Q6UX40 140 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 TDRPQ86YL5 185 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 ZNF619Q8N2I2 560 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 BANPQ8N9N5 519 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 OR10H5Q8NGA6 315 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 FBXO25Q8TCJ0 367 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 RNF128Q8TEB7 428 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 OSTF1Q92882 214 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 CPNE4Q96A23 557 aaPredicted RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 RADILQ96JH8 1075 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 RNF145Q96MT1 663 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 MRPL57Q9BQC6 102 aaKnown RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 LMF2Q9BU23 707 aaKnown RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 C19orf24Q9BVV8 132 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 MRPL46Q9H2W6 279 aaKnown RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 L2HGDHQ9H9P8 463 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 KLHL13Q9P2N7 655 aa12.31□□□□□ -0.44
VPS29-201ENST00000360579 DMGDHQ9UI17 866 aaKnown RBP12.31□□□□□ -0.44
VPS29-201ENST00000360579 A0A096LNT2 108 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 A0A0J9YW62 118 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 A0A1W2PRB8 838 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 DPRXA6NFQ7 191 aa12.3□□□□□ -0.44
VPS29-201ENST00000360579 ELOA3DA6NLF2 546 aaPredicted RBP12.3□□□□□ -0.44
VPS29-201ENST00000360579 ALG1L2C9J202 215 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms