RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 HOXA3O43365 443 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 FOXD2O60548 495 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SRSF10O75494 262 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 PDE9AO76083 593 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TNFAIP8O95379 198 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 C9P02748 559 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 IGKV3-11P04433 115 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CCDC159P0C7I6 412 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PIPP12273 146 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 PTGER1P34995 402 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RORAP35398 523 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 AHRP35869 848 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 GSTM5P46439 218 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 EMDP50402 254 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CLNS1AP54105 237 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 CLDN2P57739 230 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TAS2R50P59544 299 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RPS11P62280 158 aaKnown RBP eCLIP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SNRPGP62308 76 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 EGR4Q05215 589 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CD300CQ08708 224 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ELP6Q0PNE2 266 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 FOXD4Q12950 439 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 ARHGEF7Q14155 803 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 NFATC4Q14934 902 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 UBXN2BQ14CS0 331 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SYPL1Q16563 259 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MAPKAPK3Q16644 382 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CYP51A1Q16850 503 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CFAP157Q5JU67 520 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PRAMEF8Q5VWM4 474 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PRAMEF7Q5VXH5 474 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PTRHD1Q6GMV3 140 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 OR4C11Q6IEV9 310 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF517Q6ZMY9 492 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 EFL1Q7Z2Z2 1120 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZER1Q7Z7L7 766 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ERI1Q8IV48 349 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 DCUN1D3Q8IWE4 304 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 EID3Q8N140 333 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 BBS5Q8N3I7 341 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF557Q8N988 423 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF527Q8NB42 609 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 OR9Q2Q8NGE9 314 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF420Q8TAQ5 688 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 GCDHQ92947 438 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 RNF31Q96EP0 1072 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CNBD2Q96M20 576 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 OPALINQ96PE5 141 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 LMF2Q9BU23 707 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 LRRC61Q9BV99 259 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SPRY4Q9C004 299 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ZNF350Q9GZX5 532 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 TMEM168Q9H0V1 697 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 NELFAQ9H3P2 528 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ACTR8Q9H981 624 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 RMI1Q9H9A7 625 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CLK4Q9HAZ1 481 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SGK2Q9HBY8 427 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SIDT1Q9NXL6 827 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 WSB2Q9NYS7 404 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 FLRT3Q9NZU0 649 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 LRFN1Q9P244 771 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MMP17Q9ULZ9 603 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SNX6Q9UNH7 406 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PPIEQ9UNP9 301 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 CLCA2Q9UQC9 943 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 EXOGQ9Y2C4 368 aaKnown RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 SLC22A7Q9Y694 548 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 SIRT4Q9Y6E7 314 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 COMMD3-BMI1R4GMX3 469 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 V9GYH0 126 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 EP300Q09472 2414 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A0J9YVX5 310 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 A0A1W2PRQ8 180 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CLDN24A6NM45 220 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 C17orf51A8MQB3 221 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 KDM4EB2RXH2 506 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 M0R129 80 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 XPNPEP2O43895 674 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 FCMRO60667 390 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 APBB3O95704 486 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 KLK1P06870 262 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 FAM58BPP0C7Q3 252 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CT45A8P0DMV1 189 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CT45A9P0DMV2 189 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 VSIG10L2P0DP72 767 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 THRBP10828 461 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 PCNAP12004 261 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 DRD5P21918 477 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 XPAP23025 273 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 MMP11P24347 488 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 AK4P27144 223 aaPredicted RBP2.13□□□□□ -2.07
VPS54-202ENST00000354504 PTGDSP41222 190 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MAPK9P45984 424 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 CCR5P51681 352 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 LINC00310P59036 64 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 ACSM1Q08AH1 577 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 NPRL3Q12980 569 aa2.13□□□□□ -2.07
VPS54-202ENST00000354504 MAD2L1Q13257 205 aaPredicted RBP2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms