RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 MASP1P48740 699 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 CRISP3P54108 245 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 PSME3P61289 254 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 SLC25A3Q00325 362 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 CDK6Q00534 326 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 PLGLB1Q02325 96 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 CD226Q15762 336 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 NET1Q7Z628 596 aaPredicted RBP20.23■□□□□ 0.83
SHMT1-203ENST00000354098 SERPINA11Q86U17 422 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 CALHM3Q86XJ0 350 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 ZZZ3Q8IYH5 903 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF614Q8N883 585 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 TMEM41AQ96HV5 264 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF583Q96ND8 569 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 ZFP64Q9NPA5 681 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 ASF1BQ9NVP2 202 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 FAM208BQ5VWN6 2430 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 CFAP46Q8IYW2 2715 aa20.23■□□□□ 0.83
SHMT1-203ENST00000354098 GLSO94925 669 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 UBOX5O94941 541 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 CLK3P49761 638 aaKnown RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 SLC7A2P52569 658 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 SCARB2Q14108 478 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF141Q15928 474 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF597Q96LX8 424 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 TSPAN10Q9H1Z9 355 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 MTHFD2LQ9H903 347 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 BOKQ9UMX3 212 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 DTNAQ9Y4J8 743 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 DSPPQ9NZW4 1301 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 C15orf38-AP3S2A0A0A6YYH1 394 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 C5orf58C9J3I9 102 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 NME4O00746 187 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 SNPHO15079 494 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 NDUFB5O43674 189 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 PPIAP62937 165 aaKnown RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF630Q2M218 657 aaPredicted RBP20.22■□□□□ 0.83
SHMT1-203ENST00000354098 TIGD3Q6B0B8 471 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 FAM180AQ6UWF9 173 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 ARPINQ7Z6K5 226 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF527Q8NB42 609 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 OR1J4Q8NGS1 313 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 CALML5Q9NZT1 146 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 L3MBTL1Q9Y468 752 aa20.22■□□□□ 0.83
SHMT1-203ENST00000354098 A0A0G2JPF8 293 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 A0A1W2PQD3 144 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 EIF4E1BA6NMX2 242 aaKnown RBP20.21■□□□□ 0.83
SHMT1-203ENST00000354098 B2RBV5 119 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 HNRNPCL2B2RXH8 293 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 HNRNPCL3B7ZW38 293 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 B8ZZF3 427 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 HNRNPCL1O60812 293 aaKnown RBP20.21■□□□□ 0.83
SHMT1-203ENST00000354098 PGM3O95394 542 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 HNRNPCL4P0DMR1 293 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 ZNF24P17028 368 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 CALB2P22676 271 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 MST1P26927 711 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 MXRA7P84157 204 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 GNA13Q14344 377 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 REEP3Q6NUK4 255 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 TMEM251Q8N6I4 163 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 C11orf65Q8NCR3 313 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 BCL2L10Q9HD36 194 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 PPP4R1LQ9P1A2 415 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 FBXL2Q9UKC9 423 aa20.21■□□□□ 0.83
SHMT1-203ENST00000354098 PRRC2CQ9Y520 2896 aaKnown RBP20.21■□□□□ 0.83
SHMT1-203ENST00000354098 AGAP5A6NIR3 686 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 CLDN24A6NM45 220 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 GMFGO60234 142 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 AQP1P29972 269 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 MAGEA5P43359 124 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 MNAT1P51948 309 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 ALDH6A1Q02252 535 aaKnown RBP20.2■□□□□ 0.82
SHMT1-203ENST00000354098 HYAL4Q2M3T9 481 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 NDUFAF6Q330K2 333 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 ZNF324BQ6AW86 544 aaPredicted RBP20.2■□□□□ 0.82
SHMT1-203ENST00000354098 RINLQ6ZS11 566 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 IFNEQ86WN2 208 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 PLCZ1Q86YW0 608 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 METTL25Q8N6Q8 603 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 CPT1CQ8TCG5 803 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 PHOSPHO1Q8TCT1 267 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 FAR1Q8WVX9 515 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 SDHAF3Q9NRP4 125 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 MED11Q9P086 117 aa20.2■□□□□ 0.82
SHMT1-203ENST00000354098 SERINC4A6NH21 518 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 OIP5O43482 229 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 CRYABP02511 175 aaKnown RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 CELA3AP09093 270 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 RPS4Y1P22090 263 aaKnown RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 CPOXP36551 454 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 LIPEQ05469 1076 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 RBBP4Q09028 425 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 C17orf67Q0P5P2 114 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 VMACQ2NL98 169 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 SIAH3Q8IW03 269 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 RBM15BQ8NDT2 890 aaKnown RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 BBS10Q8TAM1 723 aa20.19■□□□□ 0.82
SHMT1-203ENST00000354098 REXO5Q96IC2 774 aaKnown RBP20.19■□□□□ 0.82
SHMT1-203ENST00000354098 BARD1Q99728 777 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms