RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ARFGEF2Q9Y6D5 1785 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 SLIT3O75094 1523 aa4.81□□□□□ -1.64
SCN1A-214ENST00000637038 APBB1O00213 710 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 KIAA2012Q0VF49 1180 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 GRIPAP1Q4V328 841 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 CAVIN1Q6NZI2 390 aaKnown RBP4.8□□□□□ -1.64
SCN1A-214ENST00000637038 SLC4A10Q6U841 1118 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 GAS2L3Q86XJ1 694 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 GPATCH3Q96I76 525 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 USP26Q9BXU7 913 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 TMX4Q9H1E5 349 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-214ENST00000637038 ABCA3Q99758 1704 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 TRIM6-TRIM34B2RNG4 842 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 HTATSF1O43719 755 aaKnown RBP4.8□□□□□ -1.64
SCN1A-214ENST00000637038 TERF1P54274 439 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 C8orf58Q8NAV2 365 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 FAM184AQ8NB25 1140 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 PPP1R9BQ96SB3 815 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 LRRCC1Q9C099 1032 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 SPATA31A1Q5TZJ5 1347 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 RTL1A6NKG5 1358 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 CEP85Q6P2H3 762 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 WAPLQ7Z5K2 1190 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 RUFY2Q8WXA3 655 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 CCDC85CA6NKD9 419 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 CHL1O00533 1208 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 SDSP20132 328 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 GTF2E1P29083 439 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-214ENST00000637038 AMPHP49418 695 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 TTC21AQ8NDW8 1320 aa4.8□□□□□ -1.64
SCN1A-214ENST00000637038 WDR33Q9C0J8 1336 aaKnown RBP4.8□□□□□ -1.64
SCN1A-214ENST00000637038 PRPF40AO75400 957 aaKnown RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 NEK4P51957 841 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 RRS1Q15050 365 aaKnown RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 EIF2AK3Q9NZJ5 1116 aaKnown RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 AOX1Q06278 1338 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 A0A1B0GUL6 1792 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 RAB11FIP3O75154 756 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 CSB-PGBD3P0DP91 1061 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 INTS4Q96HW7 963 aaKnown RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 TSPY26PQ9H489 355 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 ANO2Q9NQ90 1003 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 ZDHHC9Q9Y397 364 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 ABCC6O95255 1503 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 TPM3P06753 285 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 MNX1P50219 401 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 FKBP5Q13451 457 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 TXNRD1Q16881 649 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 ZSCAN23Q3MJ62 389 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 IPO4Q8TEX9 1081 aaKnown RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 BABAM1Q9NWV8 329 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 KCNG1Q9UIX4 513 aa4.79□□□□□ -1.64
SCN1A-214ENST00000637038 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-214ENST00000637038 PPEF1O14829 653 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 UBTFL1P0CB47 393 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 MX1P20591 662 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 OS9Q13438 667 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 SECISBP2LQ93073 1101 aaKnown RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 OSBPL3Q9H4L5 887 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 TFCP2L1Q9NZI6 479 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 AFDNP55196 1824 aaKnown RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 GOLGA6L6A8MZA4 724 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 PDE1AP54750 535 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 PLCB2Q00722 1185 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 CHAF1AQ13111 956 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 EIF4A2Q14240 407 aaKnown RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 DNTTIP2Q5QJE6 756 aaKnown RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 LRSAM1Q6UWE0 723 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 PLCD3Q8N3E9 789 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 RILPL2Q969X0 211 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 UVSSAQ2YD98 709 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 CNTROBQ8N137 903 aa4.78□□□□□ -1.64
SCN1A-214ENST00000637038 ZNF219Q9P2Y4 722 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-214ENST00000637038 OFD1O75665 1012 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 ZBTB7AO95365 584 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 TEX2Q8IWB9 1127 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 TOGARAM1Q9Y4F4 1720 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 RREB1Q92766 1687 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 MAP2K2P36507 400 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 AEBP1Q8IUX7 1158 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 ESYT1Q9BSJ8 1104 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 RBM42Q9BTD8 480 aaKnown RBP4.77□□□□□ -1.65
SCN1A-214ENST00000637038 FLT4P35916 1363 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 HMGN5P82970 282 aaKnown RBP4.77□□□□□ -1.65
SCN1A-214ENST00000637038 DCTN1Q14203 1278 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 PNMA8AQ86V59 439 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-214ENST00000637038 MEIS3Q99687 375 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 PDCL3Q9H2J4 239 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 LMBRD1Q9NUN5 540 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 HEG1Q9ULI3 1381 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 PLEKHG3A1L390 1219 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 HIP1O00291 1037 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 AKAP4Q5JQC9 854 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 CHADLQ6NUI6 762 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 MCM10Q7L590 875 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 ERC1Q8IUD2 1116 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 TMX3Q96JJ7 454 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 ZSCAN31Q96LW9 406 aaPredicted RBP4.77□□□□□ -1.65
SCN1A-214ENST00000637038 IL25Q9H293 177 aa4.77□□□□□ -1.65
SCN1A-214ENST00000637038 DIAPH3Q9NSV4 1193 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms