RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PRR5LQ6MZQ0 368 aa23.11■■□□□ 1.29
CLN3-239ENST00000628023 RBM46Q8TBY0 533 aaKnown RBP23.11■■□□□ 1.29
CLN3-239ENST00000628023 DLEC1Q9Y238 1755 aa23.11■■□□□ 1.29
CLN3-239ENST00000628023 SBF1O95248 1867 aa23.11■■□□□ 1.29
CLN3-239ENST00000628023 FLIIQ13045 1269 aa23.1■■□□□ 1.29
CLN3-239ENST00000628023 G2E3Q7L622 706 aa23.1■■□□□ 1.29
CLN3-239ENST00000628023 ZNF428Q96B54 188 aa23.1■■□□□ 1.29
CLN3-239ENST00000628023 YTHDC1Q96MU7 727 aaKnown RBP23.1■■□□□ 1.29
CLN3-239ENST00000628023 CACNA1FO60840 1977 aa23.09■■□□□ 1.29
CLN3-239ENST00000628023 GTF2E1P29083 439 aaPredicted RBP23.09■■□□□ 1.29
CLN3-239ENST00000628023 FKBP5Q13451 457 aaPredicted RBP23.09■■□□□ 1.29
CLN3-239ENST00000628023 RRAGCQ9HB90 399 aa23.09■■□□□ 1.29
CLN3-239ENST00000628023 ARFGEF2Q9Y6D5 1785 aa23.09■■□□□ 1.29
CLN3-239ENST00000628023 TCIRG1Q13488 830 aa23.08■■□□□ 1.29
CLN3-239ENST00000628023 PARP10Q53GL7 1025 aa23.08■■□□□ 1.29
CLN3-239ENST00000628023 ZNF34Q8IZ26 560 aa23.08■■□□□ 1.29
CLN3-239ENST00000628023 NYXQ9GZU5 481 aa23.08■■□□□ 1.29
CLN3-239ENST00000628023 UBN2Q6ZU65 1347 aa23.08■■□□□ 1.28
CLN3-239ENST00000628023 ANKRD36CQ5JPF3 1778 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 FSTL1Q12841 308 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 KSR2Q6VAB6 950 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 TPTE2Q6XPS3 522 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 CCDC24Q8N4L8 307 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 CNKSR1Q969H4 720 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 BCL2L13Q9BXK5 485 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 MAP3K2Q9Y2U5 619 aa23.07■■□□□ 1.28
CLN3-239ENST00000628023 PI4KAP2A4QPH2 592 aa23.06■■□□□ 1.28
CLN3-239ENST00000628023 PPP1R42Q7Z4L9 355 aa23.06■■□□□ 1.28
CLN3-239ENST00000628023 PI4KAP1Q8N8J0 262 aa23.06■■□□□ 1.28
CLN3-239ENST00000628023 SSH1Q8WYL5 1049 aa23.06■■□□□ 1.28
CLN3-239ENST00000628023 MYD88Q99836 296 aa23.06■■□□□ 1.28
CLN3-239ENST00000628023 SMC4Q9NTJ3 1288 aa23.06■■□□□ 1.28
CLN3-239ENST00000628023 ATP5J2-PTCD1G3V325 749 aa23.05■■□□□ 1.28
CLN3-239ENST00000628023 C21orf2O43822 256 aa23.05■■□□□ 1.28
CLN3-239ENST00000628023 ALDH1L2Q3SY69 923 aa23.05■■□□□ 1.28
CLN3-239ENST00000628023 STYK1Q6J9G0 422 aa23.05■■□□□ 1.28
CLN3-239ENST00000628023 IBTKQ9P2D0 1353 aaPredicted RBP23.04■■□□□ 1.28
CLN3-239ENST00000628023 GLTPD2A6NH11 291 aa23.04■■□□□ 1.28
CLN3-239ENST00000628023 NEXNQ0ZGT2 675 aa23.04■■□□□ 1.28
CLN3-239ENST00000628023 SUSD4Q5VX71 490 aa23.04■■□□□ 1.28
CLN3-239ENST00000628023 MRPL50Q8N5N7 158 aaKnown RBP23.04■■□□□ 1.28
CLN3-239ENST00000628023 UTP14AQ9BVJ6 771 aaKnown RBP23.04■■□□□ 1.28
CLN3-239ENST00000628023 ZNF219Q9P2Y4 722 aaPredicted RBP23.04■■□□□ 1.28
CLN3-239ENST00000628023 ANKRD31Q8N7Z5 1873 aa23.03■■□□□ 1.28
CLN3-239ENST00000628023 NFKBIEO00221 500 aa23.03■■□□□ 1.28
CLN3-239ENST00000628023 SOGA3Q5TF21 947 aa23.03■■□□□ 1.28
CLN3-239ENST00000628023 DPY19L2Q6NUT2 758 aa23.03■■□□□ 1.28
CLN3-239ENST00000628023 NLRP10Q86W26 655 aa23.03■■□□□ 1.28
CLN3-239ENST00000628023 MASTLQ96GX5 879 aa23.03■■□□□ 1.28
CLN3-239ENST00000628023 METTL22Q9BUU2 404 aaPredicted RBP23.03■■□□□ 1.28
CLN3-239ENST00000628023 TNRC6CQ9HCJ0 1690 aaKnown RBP23.03■■□□□ 1.28
CLN3-239ENST00000628023 SRGNP10124 158 aa23.02■■□□□ 1.28
CLN3-239ENST00000628023 VEGFAP15692 232 aaPredicted RBP23.02■■□□□ 1.28
CLN3-239ENST00000628023 NUTM1Q86Y26 1132 aa23.02■■□□□ 1.28
CLN3-239ENST00000628023 ISCA1Q9BUE6 129 aa23.02■■□□□ 1.28
CLN3-239ENST00000628023 DNAAF4Q8WXU2 420 aa23.01■■□□□ 1.27
CLN3-239ENST00000628023 TRMT112Q9UI30 125 aaKnown RBP23.01■■□□□ 1.27
CLN3-239ENST00000628023 NTSR2O95665 410 aa23■■□□□ 1.27
CLN3-239ENST00000628023 ERFEQ4G0M1 354 aa23■■□□□ 1.27
CLN3-239ENST00000628023 SMC1BQ8NDV3 1235 aa23■■□□□ 1.27
CLN3-239ENST00000628023 CCDC88AQ3V6T2 1871 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 PRELPP51888 382 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 RARSP54136 660 aaKnown RBP22.99■■□□□ 1.27
CLN3-239ENST00000628023 PRPF40BQ6NWY9 871 aaKnown RBP22.99■■□□□ 1.27
CLN3-239ENST00000628023 TAOK3Q9H2K8 898 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 PTPRCP08575 1304 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 RNF123Q5XPI4 1314 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 LTBP3Q9NS15 1303 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 ABCC12Q96J65 1359 aa22.99■■□□□ 1.27
CLN3-239ENST00000628023 F6X3S4 739 aa22.98■■□□□ 1.27
CLN3-239ENST00000628023 NPR1P16066 1061 aa22.98■■□□□ 1.27
CLN3-239ENST00000628023 CWC25Q9NXE8 425 aaPredicted RBP22.98■■□□□ 1.27
CLN3-239ENST00000628023 TRIM28Q13263 835 aaKnown RBP22.97■■□□□ 1.27
CLN3-239ENST00000628023 CCDC191Q8NCU4 936 aa22.97■■□□□ 1.27
CLN3-239ENST00000628023 SH3TC1Q8TE82 1336 aa22.97■■□□□ 1.27
CLN3-239ENST00000628023 COL11A2P13942 1736 aaPredicted RBP22.96■■□□□ 1.27
CLN3-239ENST00000628023 SLC4A10Q6U841 1118 aa22.96■■□□□ 1.27
CLN3-239ENST00000628023 DNAJC5GQ8N7S2 189 aa22.96■■□□□ 1.27
CLN3-239ENST00000628023 KIF16BQ96L93 1317 aa22.96■■□□□ 1.27
CLN3-239ENST00000628023 CWF19L2Q2TBE0 894 aaKnown RBP22.95■■□□□ 1.26
CLN3-239ENST00000628023 RTL5Q5HYW3 569 aaPredicted RBP22.95■■□□□ 1.26
CLN3-239ENST00000628023 TIAM2Q8IVF5 1701 aa22.94■■□□□ 1.26
CLN3-239ENST00000628023 NEURL1BA8MQ27 555 aa22.94■■□□□ 1.26
CLN3-239ENST00000628023 LINS1Q8NG48 757 aa22.94■■□□□ 1.26
CLN3-239ENST00000628023 FER1L6Q2WGJ9 1857 aa22.94■■□□□ 1.26
CLN3-239ENST00000628023 RIC1Q4ADV7 1423 aa22.93■■□□□ 1.26
CLN3-239ENST00000628023 IGKV5-2P06315 115 aa22.93■■□□□ 1.26
CLN3-239ENST00000628023 CCDC93Q567U6 631 aa22.93■■□□□ 1.26
CLN3-239ENST00000628023 ZBTB38Q8NAP3 1195 aaPredicted RBP22.93■■□□□ 1.26
CLN3-239ENST00000628023 FAM89AQ96GI7 184 aa22.93■■□□□ 1.26
CLN3-239ENST00000628023 NOB1Q9ULX3 412 aaKnown RBP22.93■■□□□ 1.26
CLN3-239ENST00000628023 SLX4Q8IY92 1834 aa22.93■■□□□ 1.26
CLN3-239ENST00000628023 KLRG2A4D1S0 409 aaPredicted RBP22.92■■□□□ 1.26
CLN3-239ENST00000628023 HCLS1P14317 486 aaPredicted RBP22.92■■□□□ 1.26
CLN3-239ENST00000628023 ALDH1B1P30837 517 aa22.92■■□□□ 1.26
CLN3-239ENST00000628023 NLRP3Q96P20 1036 aa22.92■■□□□ 1.26
CLN3-239ENST00000628023 WDR90Q96KV7 1748 aa22.91■■□□□ 1.26
CLN3-239ENST00000628023 DICER1Q9UPY3 1922 aaKnown RBP22.91■■□□□ 1.26
CLN3-239ENST00000628023 BRPF1P55201 1214 aaPredicted RBP22.91■■□□□ 1.26
CLN3-239ENST00000628023 IFFO2Q5TF58 517 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms