RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ANKRD36CQ5JPF3 1778 aa17.31■□□□□ 0.36
LIG3-205ENST00000585941 FOXO4P98177 505 aa17.31■□□□□ 0.36
LIG3-205ENST00000585941 PTPN12Q05209 780 aaKnown RBP17.31■□□□□ 0.36
LIG3-205ENST00000585941 RABEP1Q15276 862 aa17.31■□□□□ 0.36
LIG3-205ENST00000585941 GIGYF2Q6Y7W6 1299 aaKnown RBP17.31■□□□□ 0.36
LIG3-205ENST00000585941 AACSQ86V21 672 aa17.31■□□□□ 0.36
LIG3-205ENST00000585941 SMARCC1Q92922 1105 aaPredicted RBP17.31■□□□□ 0.36
LIG3-205ENST00000585941 KIF2CQ99661 725 aa17.31■□□□□ 0.36
LIG3-205ENST00000585941 LMBR1LQ6UX01 489 aa17.3■□□□□ 0.36
LIG3-205ENST00000585941 SLC4A9Q96Q91 983 aa17.3■□□□□ 0.36
LIG3-205ENST00000585941 ZNF831Q5JPB2 1677 aa17.3■□□□□ 0.36
LIG3-205ENST00000585941 ERVV-1B6SEH8 477 aa17.29■□□□□ 0.36
LIG3-205ENST00000585941 IL27Q8NEV9 243 aa17.29■□□□□ 0.36
LIG3-205ENST00000585941 C8orf37Q96NL8 207 aa17.29■□□□□ 0.36
LIG3-205ENST00000585941 SIL1Q9H173 461 aa17.29■□□□□ 0.36
LIG3-205ENST00000585941 ZNF330Q9Y3S2 320 aaPredicted RBP17.29■□□□□ 0.36
LIG3-205ENST00000585941 PCCAP05165 728 aaPredicted RBP17.29■□□□□ 0.36
LIG3-205ENST00000585941 MCCP23508 829 aa17.29■□□□□ 0.36
LIG3-205ENST00000585941 RREB1Q92766 1687 aa17.28■□□□□ 0.36
LIG3-205ENST00000585941 JARID2Q92833 1246 aaPredicted RBP17.28■□□□□ 0.36
LIG3-205ENST00000585941 EAF2Q96CJ1 260 aaPredicted RBP17.28■□□□□ 0.36
LIG3-205ENST00000585941 PLA2G12BQ9BX93 195 aa17.28■□□□□ 0.36
LIG3-205ENST00000585941 NUP98P52948 1817 aa17.27■□□□□ 0.36
LIG3-205ENST00000585941 ZBTB38Q8NAP3 1195 aaPredicted RBP17.27■□□□□ 0.36
LIG3-205ENST00000585941 CERKQ8TCT0 537 aa17.27■□□□□ 0.36
LIG3-205ENST00000585941 EVI5LQ96CN4 794 aa17.27■□□□□ 0.36
LIG3-205ENST00000585941 FBXO3Q9UK99 471 aa17.27■□□□□ 0.36
LIG3-205ENST00000585941 CDHR2Q9BYE9 1310 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 FAM98CQ17RN3 349 aaKnown RBP17.26■□□□□ 0.35
LIG3-205ENST00000585941 RTL5Q5HYW3 569 aaPredicted RBP17.26■□□□□ 0.35
LIG3-205ENST00000585941 RUFY2Q8WXA3 655 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 ZBTB1Q9Y2K1 713 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 LOC102724428A0A0B4J2F2 783 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 HIP1O00291 1037 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 SIK1P57059 783 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 ANAPC15P60006 121 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 KLHDC4Q8TBB5 520 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 GPR108Q9NPR9 543 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 CCDC87Q9NVE4 849 aa17.26■□□□□ 0.35
LIG3-205ENST00000585941 CIAO1O76071 339 aa17.25■□□□□ 0.35
LIG3-205ENST00000585941 ATP6V1AP38606 617 aa17.25■□□□□ 0.35
LIG3-205ENST00000585941 IL15P40933 162 aaPredicted RBP17.25■□□□□ 0.35
LIG3-205ENST00000585941 ACSBG1Q96GR2 724 aa17.25■□□□□ 0.35
LIG3-205ENST00000585941 ARXQ96QS3 562 aa17.25■□□□□ 0.35
LIG3-205ENST00000585941 ANTXR1Q9H6X2 564 aa17.25■□□□□ 0.35
LIG3-205ENST00000585941 CHMP3Q9Y3E7 222 aa17.25■□□□□ 0.35
LIG3-205ENST00000585941 PALLDQ8WX93 1383 aa17.24■□□□□ 0.35
LIG3-205ENST00000585941 EIF5P55010 431 aaKnown RBP17.24■□□□□ 0.35
LIG3-205ENST00000585941 TNNI3KQ59H18 835 aa17.24■□□□□ 0.35
LIG3-205ENST00000585941 DZIP3Q86Y13 1208 aaKnown RBP17.24■□□□□ 0.35
LIG3-205ENST00000585941 USP21Q9UK80 565 aa17.24■□□□□ 0.35
LIG3-205ENST00000585941 FPGT-TNNI3KV9GXZ4 949 aa17.24■□□□□ 0.35
LIG3-205ENST00000585941 A0A0G2JS52 829 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 NBR1Q14596 966 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 NLRP10Q86W26 655 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 CCDC8Q9H0W5 538 aaPredicted RBP17.23■□□□□ 0.35
LIG3-205ENST00000585941 ANO2Q9NQ90 1003 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 MYH3P11055 1940 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 THSD7AQ9UPZ6 1657 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 K7ELQ4 463 aaPredicted RBP17.23■□□□□ 0.35
LIG3-205ENST00000585941 SGSM2O43147 1006 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 ST18O60284 1047 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 MYT1Q01538 1121 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 TFCP2Q12800 502 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 CCDC57Q2TAC2 916 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 IL17RAQ96F46 866 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 DIAPH3Q9NSV4 1193 aa17.23■□□□□ 0.35
LIG3-205ENST00000585941 EYA2O00167 538 aa17.22■□□□□ 0.35
LIG3-205ENST00000585941 MAP4K4O95819 1239 aaPredicted RBP17.22■□□□□ 0.35
LIG3-205ENST00000585941 CSF1RP07333 972 aa17.22■□□□□ 0.35
LIG3-205ENST00000585941 ATP5JP18859 108 aa17.22■□□□□ 0.35
LIG3-205ENST00000585941 CRKLP46109 303 aaKnown RBP17.22■□□□□ 0.35
LIG3-205ENST00000585941 INTS5Q6P9B9 1019 aaKnown RBP17.22■□□□□ 0.35
LIG3-205ENST00000585941 SLKQ9H2G2 1235 aaPredicted RBP17.22■□□□□ 0.35
LIG3-205ENST00000585941 COL5A3P25940 1745 aaPredicted RBP17.22■□□□□ 0.35
LIG3-205ENST00000585941 HLFQ16534 295 aa17.21■□□□□ 0.35
LIG3-205ENST00000585941 KIAA1211Q6ZU35 1233 aa17.21■□□□□ 0.35
LIG3-205ENST00000585941 TICAM2Q86XR7 235 aa17.21■□□□□ 0.35
LIG3-205ENST00000585941 AK7Q96M32 723 aa17.21■□□□□ 0.35
LIG3-205ENST00000585941 ATG9AQ7Z3C6 839 aa17.2■□□□□ 0.34
LIG3-205ENST00000585941 CHMP5Q9NZZ3 219 aa17.2■□□□□ 0.34
LIG3-205ENST00000585941 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.2■□□□□ 0.34
LIG3-205ENST00000585941 ZNF34Q8IZ26 560 aa17.2■□□□□ 0.34
LIG3-205ENST00000585941 FAM89AQ96GI7 184 aa17.2■□□□□ 0.34
LIG3-205ENST00000585941 TLR7Q9NYK1 1049 aaKnown RBP17.2■□□□□ 0.34
LIG3-205ENST00000585941 DBNLQ9UJU6 430 aaKnown RBP17.2■□□□□ 0.34
LIG3-205ENST00000585941 RFX7Q2KHR2 1363 aa17.19■□□□□ 0.34
LIG3-205ENST00000585941 RAD50Q92878 1312 aa17.19■□□□□ 0.34
LIG3-205ENST00000585941 HSP90B1P14625 803 aaKnown RBP17.19■□□□□ 0.34
LIG3-205ENST00000585941 NFKBIBQ15653 356 aa17.19■□□□□ 0.34
LIG3-205ENST00000585941 MEX3CQ5U5Q3 659 aaKnown RBP17.19■□□□□ 0.34
LIG3-205ENST00000585941 CIZ1Q9ULV3 898 aaPredicted RBP17.19■□□□□ 0.34
LIG3-205ENST00000585941 TBC1D2BQ9UPU7 963 aa17.19■□□□□ 0.34
LIG3-205ENST00000585941 MYH14Q7Z406 1995 aaKnown RBP17.18■□□□□ 0.34
LIG3-205ENST00000585941 RGL2O15211 777 aa17.18■□□□□ 0.34
LIG3-205ENST00000585941 GPTP24298 496 aa17.18■□□□□ 0.34
LIG3-205ENST00000585941 MCM2P49736 904 aa17.18■□□□□ 0.34
LIG3-205ENST00000585941 IFIT5Q13325 482 aaKnown RBP17.18■□□□□ 0.34
LIG3-205ENST00000585941 ITPK1Q13572 414 aa17.18■□□□□ 0.34
LIG3-205ENST00000585941 PARP10Q53GL7 1025 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms