RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 A6NJY4 79 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 KRTAP9-7A8MTY7 169 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 EML1O00423 815 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 RAD21O60216 631 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 GRIK5Q16478 980 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 DZIP1LQ8IYY4 767 aaKnown RBP3.1□□□□□ -1.91
USP3-209ENST00000558925 SLC6A14Q9UN76 642 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 TBC1D2BQ9UPU7 963 aa3.1□□□□□ -1.91
USP3-209ENST00000558925 POM121CA8CG34 1229 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 DEAF1O75398 565 aaPredicted RBP3.09□□□□□ -1.91
USP3-209ENST00000558925 ALX3O95076 343 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 SPINK2P20155 84 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 ABL2P42684 1182 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 TBC1D8BQ0IIM8 1120 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 TRIM26Q12899 539 aaPredicted RBP3.09□□□□□ -1.91
USP3-209ENST00000558925 TMEM259Q4ZIN3 620 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 FBXO11Q86XK2 927 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 BANK1Q8NDB2 785 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 HSH2DQ96JZ2 352 aa3.09□□□□□ -1.91
USP3-209ENST00000558925 TBCELQ5QJ74 424 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 MSL1Q68DK7 614 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 OGFOD2Q6N063 350 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 PSAPL1Q6NUJ1 521 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 ZNF280CQ8ND82 737 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 BHMTQ93088 406 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 L3MBTL2Q969R5 705 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 UBE2OQ9C0C9 1292 aaKnown RBP3.08□□□□□ -1.92
USP3-209ENST00000558925 BRD7Q9NPI1 651 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 ADGRE2Q9UHX3 823 aa3.08□□□□□ -1.92
USP3-209ENST00000558925 ZNF330Q9Y3S2 320 aaPredicted RBP3.08□□□□□ -1.92
USP3-209ENST00000558925 C8AP07357 584 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 EPHA4P54764 986 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 KCNQ4P56696 695 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 TYRO3Q06418 890 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 IRF5Q13568 498 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 KRTAP5-3Q6L8H2 238 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 ZNF592Q92610 1267 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 CCDC97Q96F63 343 aaPredicted RBP3.07□□□□□ -1.92
USP3-209ENST00000558925 IGFLR1Q9H665 355 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 PODXL2Q9NZ53 605 aa3.07□□□□□ -1.92
USP3-209ENST00000558925 SCHIP1Q9P0W5 487 aaPredicted RBP3.07□□□□□ -1.92
USP3-209ENST00000558925 DLL1O00548 723 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 NOS2P35228 1153 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 TEAD4Q15561 434 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 ZDHHC13Q8IUH4 622 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 ADAMTS19Q8TE59 1207 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 GLMNQ92990 594 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 LPIN3Q9BQK8 851 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 DNAJB12Q9NXW2 375 aaKnown RBP3.06□□□□□ -1.92
USP3-209ENST00000558925 PCDHGA11Q9Y5H2 935 aa3.06□□□□□ -1.92
USP3-209ENST00000558925 PRR19A6NJB7 356 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 VAC14Q08AM6 782 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 SLFNL1Q499Z3 407 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 IGF2-ASQ6U949 168 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 SLC51AQ86UW1 340 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 DTX1Q86Y01 620 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 SLC9A9Q8IVB4 645 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 AGGF1Q8N302 714 aaeCLIP3.05□□□□□ -1.92
USP3-209ENST00000558925 DTWD1Q8N5C7 304 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 CCER1Q8TC90 406 aaPredicted RBP3.05□□□□□ -1.92
USP3-209ENST00000558925 CEP63Q96MT8 703 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 KCNH4Q9UQ05 1017 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 NDUFB9Q9Y6M9 179 aa3.05□□□□□ -1.92
USP3-209ENST00000558925 SFI1A8K8P3 1242 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 ZBTB42B2RXF5 422 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 F8W735 103 aaPredicted RBP3.04□□□□□ -1.92
USP3-209ENST00000558925 RGS9O75916 674 aaPredicted RBP3.04□□□□□ -1.92
USP3-209ENST00000558925 IGLV1-40P01703 118 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 GRNP28799 593 aaKnown RBP3.04□□□□□ -1.92
USP3-209ENST00000558925 NEUROD1Q13562 356 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 PERM1Q5SV97 790 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 LCE5AQ5TCM9 118 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 Q6ZS46 218 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 RETREG2Q8NC44 543 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 SERBP1Q8NC51 408 aaKnown RBP eCLIP3.04□□□□□ -1.92
USP3-209ENST00000558925 CALR3Q96L12 384 aaKnown RBP3.04□□□□□ -1.92
USP3-209ENST00000558925 UBL7Q96S82 380 aaPredicted RBP3.04□□□□□ -1.92
USP3-209ENST00000558925 GSX2Q9BZM3 304 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 AKTIPQ9H8T0 292 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 SERPINA10Q9UK55 444 aa3.04□□□□□ -1.92
USP3-209ENST00000558925 PDIA4P13667 645 aaKnown RBP3.03□□□□□ -1.92
USP3-209ENST00000558925 CPB1P15086 417 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 RFX1P22670 979 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 SPOCD1Q6ZMY3 1216 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 NFXL1Q6ZNB6 911 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 FAM35AQ86V20 835 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 ABI1Q8IZP0 508 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 TNS4Q8IZW8 715 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 ARMC10Q8N2F6 343 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 PLPP7Q8NBV4 271 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 RHPN1Q8TCX5 695 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 SIRT1Q96EB6 747 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 SUSD3Q96L08 255 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 ZNF358Q9NW07 568 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 ZNF232Q9UNY5 417 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 RAXQ9Y2V3 346 aa3.03□□□□□ -1.92
USP3-209ENST00000558925 GPC6Q9Y625 555 aaPredicted RBP3.03□□□□□ -1.92
USP3-209ENST00000558925 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.02□□□□□ -1.93
USP3-209ENST00000558925 CARNS1A5YM72 827 aa3.02□□□□□ -1.93
USP3-209ENST00000558925 PIK3CDO00329 1044 aa3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms