RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MAP3K15Q6ZN16 1313 aa15.4■□□□□ 0.06
SHMT2-229ENST00000557348 TRIM6-TRIM34B2RNG4 842 aa15.4■□□□□ 0.06
SHMT2-229ENST00000557348 ERVV-1B6SEH8 477 aa15.4■□□□□ 0.06
SHMT2-229ENST00000557348 ATP5J2-PTCD1G3V325 749 aa15.4■□□□□ 0.06
SHMT2-229ENST00000557348 ECHDC1Q9NTX5 307 aa15.4■□□□□ 0.06
SHMT2-229ENST00000557348 GIGYF2Q6Y7W6 1299 aaKnown RBP15.39■□□□□ 0.05
SHMT2-229ENST00000557348 MARCH10Q8NA82 808 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-229ENST00000557348 PI4K2BQ8TCG2 481 aa15.39■□□□□ 0.05
SHMT2-229ENST00000557348 ZBTB3Q9H5J0 574 aa15.39■□□□□ 0.05
SHMT2-229ENST00000557348 FBXO3Q9UK99 471 aa15.39■□□□□ 0.05
SHMT2-229ENST00000557348 BCL9LQ86UU0 1499 aa15.39■□□□□ 0.05
SHMT2-229ENST00000557348 MCCP23508 829 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 C8orf37Q96NL8 207 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 HIP1O00291 1037 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 FRAT2O75474 233 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-229ENST00000557348 PCCAP05165 728 aaPredicted RBP15.38■□□□□ 0.05
SHMT2-229ENST00000557348 RABEP1Q15276 862 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 NUTM1Q86Y26 1132 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 RILPL2Q969X0 211 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 PLA2G12BQ9BX93 195 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 USP26Q9BXU7 913 aa15.38■□□□□ 0.05
SHMT2-229ENST00000557348 PA2G4Q9UQ80 394 aaKnown RBP15.38■□□□□ 0.05
SHMT2-229ENST00000557348 TUBGCP6Q96RT7 1819 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 CHMLP26374 656 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 AACSQ86V21 672 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 ESYT1Q9BSJ8 1104 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 TBC1D2Q9BYX2 928 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 CDHR2Q9BYE9 1310 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 ZNF831Q5JPB2 1677 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 TJP1Q07157 1748 aa15.37■□□□□ 0.05
SHMT2-229ENST00000557348 RFX5P48382 616 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-229ENST00000557348 PTPN12Q05209 780 aaKnown RBP15.36■□□□□ 0.05
SHMT2-229ENST00000557348 EPHA10Q5JZY3 1008 aa15.36■□□□□ 0.05
SHMT2-229ENST00000557348 TICAM2Q86XR7 235 aa15.36■□□□□ 0.05
SHMT2-229ENST00000557348 ZBTB38Q8NAP3 1195 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-229ENST00000557348 RUFY2Q8WXA3 655 aa15.36■□□□□ 0.05
SHMT2-229ENST00000557348 RGS17Q9UGC6 210 aaPredicted RBP15.36■□□□□ 0.05
SHMT2-229ENST00000557348 RGL2O15211 777 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 CIAO1O76071 339 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 SASH1O94885 1247 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 HSP90B1P14625 803 aaKnown RBP15.35■□□□□ 0.05
SHMT2-229ENST00000557348 FOXO4P98177 505 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 LMBR1LQ6UX01 489 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 GPR108Q9NPR9 543 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 CCDC87Q9NVE4 849 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 PALLDQ8WX93 1383 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 LOC102724428A0A0B4J2F2 783 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 CLCN1P35523 988 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 SIK1P57059 783 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 ANAPC15P60006 121 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 EVI5LQ96CN4 794 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 AK7Q96M32 723 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 SLC4A9Q96Q91 983 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-229ENST00000557348 USP21Q9UK80 565 aa15.35■□□□□ 0.05
SHMT2-229ENST00000557348 ZNF330Q9Y3S2 320 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-229ENST00000557348 RRP9O43818 475 aaKnown RBP15.34■□□□□ 0.05
SHMT2-229ENST00000557348 PTMSP20962 102 aa15.34■□□□□ 0.05
SHMT2-229ENST00000557348 IL15P40933 162 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-229ENST00000557348 ZBTB1Q9Y2K1 713 aa15.34■□□□□ 0.05
SHMT2-229ENST00000557348 RREB1Q92766 1687 aa15.34■□□□□ 0.05
SHMT2-229ENST00000557348 ATP6V1AP38606 617 aa15.33■□□□□ 0.04
SHMT2-229ENST00000557348 FAM98CQ17RN3 349 aaKnown RBP15.33■□□□□ 0.04
SHMT2-229ENST00000557348 TSHZ3Q63HK5 1081 aa15.33■□□□□ 0.04
SHMT2-229ENST00000557348 DZIP3Q86Y13 1208 aaKnown RBP15.33■□□□□ 0.04
SHMT2-229ENST00000557348 SIL1Q9H173 461 aa15.33■□□□□ 0.04
SHMT2-229ENST00000557348 RFX7Q2KHR2 1363 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 SLC4A3P48751 1232 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 EIF5P55010 431 aaKnown RBP15.32■□□□□ 0.04
SHMT2-229ENST00000557348 EAF2Q96CJ1 260 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-229ENST00000557348 ST18O60284 1047 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 CCDC57Q2TAC2 916 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 TNNI3KQ59H18 835 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 POTEAQ6S8J7 498 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 IL17RAQ96F46 866 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 KIF2CQ99661 725 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 CHMP3Q9Y3E7 222 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 FPGT-TNNI3KV9GXZ4 949 aa15.32■□□□□ 0.04
SHMT2-229ENST00000557348 THSD7AQ9UPZ6 1657 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 RAD50Q92878 1312 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 FSD2A1L4K1 749 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 CRKLP46109 303 aaKnown RBP15.31■□□□□ 0.04
SHMT2-229ENST00000557348 PARP10Q53GL7 1025 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 ZNF772Q68DY9 489 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-229ENST00000557348 NLRP10Q86W26 655 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 ACSBG1Q96GR2 724 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 DIAPH3Q9NSV4 1193 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 ZNF652Q9Y2D9 606 aa15.31■□□□□ 0.04
SHMT2-229ENST00000557348 ANKRD36CQ5JPF3 1778 aa15.3■□□□□ 0.04
SHMT2-229ENST00000557348 A0A0G2JS52 829 aa15.3■□□□□ 0.04
SHMT2-229ENST00000557348 EYA2O00167 538 aa15.3■□□□□ 0.04
SHMT2-229ENST00000557348 ATP5JP18859 108 aa15.3■□□□□ 0.04
SHMT2-229ENST00000557348 KIAA1211Q6ZU35 1233 aa15.3■□□□□ 0.04
SHMT2-229ENST00000557348 ARXQ96QS3 562 aa15.3■□□□□ 0.04
SHMT2-229ENST00000557348 K7ELQ4 463 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-229ENST00000557348 SGSM2O43147 1006 aa15.29■□□□□ 0.04
SHMT2-229ENST00000557348 CSF1RP07333 972 aa15.29■□□□□ 0.04
SHMT2-229ENST00000557348 MCM2P49736 904 aa15.29■□□□□ 0.04
SHMT2-229ENST00000557348 ANTXR1Q9H6X2 564 aa15.29■□□□□ 0.04
SHMT2-229ENST00000557348 ANO2Q9NQ90 1003 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms