RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 HSP90AB4PQ58FF6 505 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 PLA2G12BQ9BX93 195 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 C22orf23Q9BZE7 217 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 ZBTB1Q9Y2K1 713 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 UBR3Q6ZT12 1888 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 FAM98CQ17RN3 349 aaKnown RBP10.98□□□□□ -0.65
TDP1-210ENST00000554976 TSHZ3Q63HK5 1081 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 CWC25Q9NXE8 425 aaPredicted RBP10.98□□□□□ -0.65
TDP1-210ENST00000554976 STARD3NLO95772 234 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 IL6STP40189 918 aaPredicted RBP10.98□□□□□ -0.65
TDP1-210ENST00000554976 MFAP1P55081 439 aaKnown RBP10.98□□□□□ -0.65
TDP1-210ENST00000554976 UBE3BQ7Z3V4 1068 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 ZBTB3Q9H5J0 574 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 IL1RAPL2Q9NP60 686 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 TTC41PQ6P2S7 1318 aa10.98□□□□□ -0.65
TDP1-210ENST00000554976 A0A087WZG4 1122 aa10.97□□□□□ -0.65
TDP1-210ENST00000554976 KCNQ2O43526 872 aa10.97□□□□□ -0.65
TDP1-210ENST00000554976 EIF5P55010 431 aaKnown RBP10.97□□□□□ -0.65
TDP1-210ENST00000554976 HLFQ16534 295 aa10.97□□□□□ -0.65
TDP1-210ENST00000554976 GIGYF2Q6Y7W6 1299 aaKnown RBP10.97□□□□□ -0.65
TDP1-210ENST00000554976 IL17RAQ96F46 866 aa10.97□□□□□ -0.65
TDP1-210ENST00000554976 RBM42Q9BTD8 480 aaKnown RBP10.97□□□□□ -0.65
TDP1-210ENST00000554976 CDHR2Q9BYE9 1310 aa10.97□□□□□ -0.65
TDP1-210ENST00000554976 USP21Q9UK80 565 aa10.97□□□□□ -0.65
TDP1-210ENST00000554976 ERVV-1B6SEH8 477 aa10.96□□□□□ -0.65
TDP1-210ENST00000554976 NUTM1Q86Y26 1132 aa10.96□□□□□ -0.65
TDP1-210ENST00000554976 ERC1Q8IUD2 1116 aa10.96□□□□□ -0.65
TDP1-210ENST00000554976 JARID2Q92833 1246 aaPredicted RBP10.96□□□□□ -0.65
TDP1-210ENST00000554976 ACSBG1Q96GR2 724 aa10.96□□□□□ -0.65
TDP1-210ENST00000554976 NGLY1Q96IV0 654 aa10.96□□□□□ -0.65
TDP1-210ENST00000554976 ZNF609O15014 1411 aa10.96□□□□□ -0.66
TDP1-210ENST00000554976 UBN2Q6ZU65 1347 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 LOC102724428A0A0B4J2F2 783 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 PCCAP05165 728 aaPredicted RBP10.95□□□□□ -0.66
TDP1-210ENST00000554976 SIK1P57059 783 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 PTF1AQ7RTS3 328 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 ATG9AQ7Z3C6 839 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 ZNF34Q8IZ26 560 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 KLHDC4Q8TBB5 520 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 ZBTB47Q9UFB7 747 aaPredicted RBP10.95□□□□□ -0.66
TDP1-210ENST00000554976 CSF1RP07333 972 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 USP26Q9BXU7 913 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 RIC1Q4ADV7 1423 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 AKAP11Q9UKA4 1901 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 CRKLP46109 303 aaKnown RBP10.95□□□□□ -0.66
TDP1-210ENST00000554976 EAF2Q96CJ1 260 aaPredicted RBP10.95□□□□□ -0.66
TDP1-210ENST00000554976 DOCK2Q92608 1830 aa10.95□□□□□ -0.66
TDP1-210ENST00000554976 MYH7P12883 1935 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 CHMLP26374 656 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 NLRP10Q86W26 655 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 IL25Q9H293 177 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 RGPD3A6NKT7 1758 aaPredicted RBP10.94□□□□□ -0.66
TDP1-210ENST00000554976 RGPD4Q7Z3J3 1758 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 AFF2P51816 1311 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 ZBTB38Q8NAP3 1195 aaPredicted RBP10.94□□□□□ -0.66
TDP1-210ENST00000554976 GJD4Q96KN9 370 aaPredicted RBP10.94□□□□□ -0.66
TDP1-210ENST00000554976 UPF2Q9HAU5 1272 aaKnown RBP10.94□□□□□ -0.66
TDP1-210ENST00000554976 CCDC87Q9NVE4 849 aa10.94□□□□□ -0.66
TDP1-210ENST00000554976 TLR7Q9NYK1 1049 aaKnown RBP10.94□□□□□ -0.66
TDP1-210ENST00000554976 TNS1Q9HBL0 1735 aaKnown RBP10.93□□□□□ -0.66
TDP1-210ENST00000554976 CAMTA2O94983 1202 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 KIF6Q6ZMV9 814 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 LINC00116Q8NCU8 138 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 SYTL4Q96C24 671 aaPredicted RBP10.93□□□□□ -0.66
TDP1-210ENST00000554976 TBC1D2Q9BYX2 928 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 CNTNAP4Q9C0A0 1308 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 KAT6BQ8WYB5 2073 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 LMBR1LQ6UX01 489 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 SMARCC1Q92922 1105 aaPredicted RBP10.93□□□□□ -0.66
TDP1-210ENST00000554976 SNX21Q969T3 373 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 ESYT1Q9BSJ8 1104 aa10.93□□□□□ -0.66
TDP1-210ENST00000554976 TNRC6CQ9HCJ0 1690 aaKnown RBP10.92□□□□□ -0.66
TDP1-210ENST00000554976 CIAO1O76071 339 aa10.92□□□□□ -0.66
TDP1-210ENST00000554976 ATP6V1AP38606 617 aa10.92□□□□□ -0.66
TDP1-210ENST00000554976 SNRKQ9NRH2 765 aa10.92□□□□□ -0.66
TDP1-210ENST00000554976 RGL2O15211 777 aa10.92□□□□□ -0.66
TDP1-210ENST00000554976 SLC4A3P48751 1232 aa10.92□□□□□ -0.66
TDP1-210ENST00000554976 ANTXR1Q9H6X2 564 aa10.92□□□□□ -0.66
TDP1-210ENST00000554976 CCDC9Q9Y3X0 531 aaKnown RBP10.92□□□□□ -0.66
TDP1-210ENST00000554976 DZIP3Q86Y13 1208 aaKnown RBP10.91□□□□□ -0.66
TDP1-210ENST00000554976 GPR108Q9NPR9 543 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 EPB41L2O43491 1005 aaKnown RBP10.91□□□□□ -0.66
TDP1-210ENST00000554976 DDIT3P35638 169 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 TFCP2Q12800 502 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 HSP90AB3PQ58FF7 597 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 TNNI3KQ59H18 835 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 CLASRPQ8N2M8 674 aaKnown RBP10.91□□□□□ -0.66
TDP1-210ENST00000554976 ECHDC1Q9NTX5 307 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 FPGT-TNNI3KV9GXZ4 949 aa10.91□□□□□ -0.66
TDP1-210ENST00000554976 G3BP1Q13283 466 aaKnown RBP eCLIP10.9□□□□□ -0.66
TDP1-210ENST00000554976 MYO5AQ9Y4I1 1855 aaKnown RBP10.9□□□□□ -0.66
TDP1-210ENST00000554976 RFX7Q2KHR2 1363 aa10.9□□□□□ -0.66
TDP1-210ENST00000554976 ERC2O15083 957 aa10.9□□□□□ -0.66
TDP1-210ENST00000554976 GLRX3O76003 335 aaKnown RBP10.9□□□□□ -0.66
TDP1-210ENST00000554976 AACSQ86V21 672 aa10.9□□□□□ -0.66
TDP1-210ENST00000554976 SYNE4Q8N205 404 aa10.9□□□□□ -0.66
TDP1-210ENST00000554976 PKNOX2Q96KN3 472 aa10.9□□□□□ -0.66
TDP1-210ENST00000554976 DBNLQ9UJU6 430 aaKnown RBP10.9□□□□□ -0.66
TDP1-210ENST00000554976 TAF1P21675 1872 aa10.9□□□□□ -0.67
TDP1-210ENST00000554976 CD2BP2O95400 341 aaKnown RBP10.9□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms