RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 CCDC9Q9Y3X0 531 aaKnown RBP32.2■■■□□ 2.74
CCDC88C-205ENST00000553403 TJP1Q07157 1748 aa32.19■■■□□ 2.74
CCDC88C-205ENST00000553403 IFIT2P09913 472 aaKnown RBP32.19■■■□□ 2.74
CCDC88C-205ENST00000553403 ESYT1Q9BSJ8 1104 aa32.19■■■□□ 2.74
CCDC88C-205ENST00000553403 CYP19A1P11511 503 aaPredicted RBP32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 TRIM28Q13263 835 aaKnown RBP32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 TCIRG1Q13488 830 aa32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 KIF6Q6ZMV9 814 aa32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 JARID2Q92833 1246 aaPredicted RBP32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 SYTL4Q96C24 671 aaPredicted RBP32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 SLC4A9Q96Q91 983 aa32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 ECHDC1Q9NTX5 307 aa32.18■■■□□ 2.74
CCDC88C-205ENST00000553403 NBR1Q14596 966 aa32.17■■■□□ 2.74
CCDC88C-205ENST00000553403 FOXO4P98177 505 aa32.16■■■□□ 2.74
CCDC88C-205ENST00000553403 CNTROBQ8N137 903 aa32.16■■■□□ 2.74
CCDC88C-205ENST00000553403 AACSQ86V21 672 aa32.15■■■□□ 2.74
CCDC88C-205ENST00000553403 MARCH10Q8NA82 808 aaPredicted RBP32.15■■■□□ 2.74
CCDC88C-205ENST00000553403 PTPN12Q05209 780 aaKnown RBP32.15■■■□□ 2.74
CCDC88C-205ENST00000553403 RABEP1Q15276 862 aa32.14■■■□□ 2.74
CCDC88C-205ENST00000553403 MAP3K15Q6ZN16 1313 aa32.13■■■□□ 2.73
CCDC88C-205ENST00000553403 SIL1Q9H173 461 aa32.13■■■□□ 2.73
CCDC88C-205ENST00000553403 EPB41L2O43491 1005 aaKnown RBP32.12■■■□□ 2.73
CCDC88C-205ENST00000553403 LMBR1LQ6UX01 489 aa32.12■■■□□ 2.73
CCDC88C-205ENST00000553403 ANTXR1Q9H6X2 564 aa32.12■■■□□ 2.73
CCDC88C-205ENST00000553403 VPS72Q15906 364 aa32.11■■■□□ 2.73
CCDC88C-205ENST00000553403 KLHDC4Q8TBB5 520 aa32.11■■■□□ 2.73
CCDC88C-205ENST00000553403 EAF2Q96CJ1 260 aaPredicted RBP32.11■■■□□ 2.73
CCDC88C-205ENST00000553403 AK9Q5TCS8 1911 aa32.11■■■□□ 2.73
CCDC88C-205ENST00000553403 ZNF330Q9Y3S2 320 aaPredicted RBP32.1■■■□□ 2.73
CCDC88C-205ENST00000553403 HSP90AB3PQ58FF7 597 aa32.09■■■□□ 2.73
CCDC88C-205ENST00000553403 GIGYF2Q6Y7W6 1299 aaKnown RBP32.09■■■□□ 2.73
CCDC88C-205ENST00000553403 RTL5Q5HYW3 569 aaPredicted RBP32.08■■■□□ 2.73
CCDC88C-205ENST00000553403 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP32.08■■■□□ 2.73
CCDC88C-205ENST00000553403 IL6STP40189 918 aaPredicted RBP32.07■■■□□ 2.72
CCDC88C-205ENST00000553403 SLKQ9H2G2 1235 aaPredicted RBP32.07■■■□□ 2.72
CCDC88C-205ENST00000553403 ZBTB1Q9Y2K1 713 aa32.07■■■□□ 2.72
CCDC88C-205ENST00000553403 MAP4K4O95819 1239 aaPredicted RBP32.06■■■□□ 2.72
CCDC88C-205ENST00000553403 PCCAP05165 728 aaPredicted RBP32.06■■■□□ 2.72
CCDC88C-205ENST00000553403 KAT6BQ8WYB5 2073 aa32.06■■■□□ 2.72
CCDC88C-205ENST00000553403 CICQ96RK0 1608 aaPredicted RBP32.05■■■□□ 2.72
CCDC88C-205ENST00000553403 MCCP23508 829 aa32.05■■■□□ 2.72
CCDC88C-205ENST00000553403 ACSBG1Q96GR2 724 aa32.05■■■□□ 2.72
CCDC88C-205ENST00000553403 PLA2G12BQ9BX93 195 aa32.05■■■□□ 2.72
CCDC88C-205ENST00000553403 CCDC8Q9H0W5 538 aaPredicted RBP32.05■■■□□ 2.72
CCDC88C-205ENST00000553403 ERVV-1B6SEH8 477 aa32.04■■■□□ 2.72
CCDC88C-205ENST00000553403 EVI5LQ96CN4 794 aa32.04■■■□□ 2.72
CCDC88C-205ENST00000553403 A0A0G2JS52 829 aa32.03■■■□□ 2.72
CCDC88C-205ENST00000553403 MYT1Q01538 1121 aa32.03■■■□□ 2.72
CCDC88C-205ENST00000553403 NFKBIBQ15653 356 aa32.03■■■□□ 2.72
CCDC88C-205ENST00000553403 K7ELQ4 463 aaPredicted RBP32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 TNNI3KQ59H18 835 aa32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 ZBTB38Q8NAP3 1195 aaPredicted RBP32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 SMARCC1Q92922 1105 aaPredicted RBP32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 CHMP3Q9Y3E7 222 aa32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 FPGT-TNNI3KV9GXZ4 949 aa32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 TFCP2Q12800 502 aa32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 ANO2Q9NQ90 1003 aa32.02■■■□□ 2.72
CCDC88C-205ENST00000553403 SGSM2O43147 1006 aa32.01■■■□□ 2.71
CCDC88C-205ENST00000553403 IL17RAQ96F46 866 aa32.01■■■□□ 2.71
CCDC88C-205ENST00000553403 CDHR2Q9BYE9 1310 aa32■■■□□ 2.71
CCDC88C-205ENST00000553403 ANAPC15P60006 121 aa32■■■□□ 2.71
CCDC88C-205ENST00000553403 HLFQ16534 295 aa32■■■□□ 2.71
CCDC88C-205ENST00000553403 FAM98CQ17RN3 349 aaKnown RBP32■■■□□ 2.71
CCDC88C-205ENST00000553403 TLR7Q9NYK1 1049 aaKnown RBP32■■■□□ 2.71
CCDC88C-205ENST00000553403 ANKRD36CQ5JPF3 1778 aa32■■■□□ 2.71
CCDC88C-205ENST00000553403 LOC102724428A0A0B4J2F2 783 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 CD2BP2O95400 341 aaKnown RBP31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 SIK1P57059 783 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 SEPT12Q8IYM1 358 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 ARXQ96QS3 562 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 GPR108Q9NPR9 543 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 RREB1Q92766 1687 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 IL15P40933 162 aaPredicted RBP31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 RUFY2Q8WXA3 655 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 CCDC87Q9NVE4 849 aa31.99■■■□□ 2.71
CCDC88C-205ENST00000553403 CIAO1O76071 339 aa31.98■■■□□ 2.71
CCDC88C-205ENST00000553403 ATP6V1AP38606 617 aa31.98■■■□□ 2.71
CCDC88C-205ENST00000553403 NLRP10Q86W26 655 aa31.98■■■□□ 2.71
CCDC88C-205ENST00000553403 CHMP5Q9NZZ3 219 aa31.98■■■□□ 2.71
CCDC88C-205ENST00000553403 HIP1O00291 1037 aa31.97■■■□□ 2.71
CCDC88C-205ENST00000553403 EIF5P55010 431 aaKnown RBP31.97■■■□□ 2.71
CCDC88C-205ENST00000553403 INTS5Q6P9B9 1019 aaKnown RBP31.97■■■□□ 2.71
CCDC88C-205ENST00000553403 ATG9AQ7Z3C6 839 aa31.97■■■□□ 2.71
CCDC88C-205ENST00000553403 DZIP3Q86Y13 1208 aaKnown RBP31.97■■■□□ 2.71
CCDC88C-205ENST00000553403 PALLDQ8WX93 1383 aa31.97■■■□□ 2.71
CCDC88C-205ENST00000553403 SPRYD3Q8NCJ5 442 aa31.96■■■□□ 2.71
CCDC88C-205ENST00000553403 DIAPH3Q9NSV4 1193 aa31.96■■■□□ 2.71
CCDC88C-205ENST00000553403 FBXO3Q9UK99 471 aa31.96■■■□□ 2.71
CCDC88C-205ENST00000553403 EYA2O00167 538 aa31.95■■■□□ 2.71
CCDC88C-205ENST00000553403 ATP5JP18859 108 aa31.95■■■□□ 2.71
CCDC88C-205ENST00000553403 ST18O60284 1047 aa31.95■■■□□ 2.7
CCDC88C-205ENST00000553403 CSF1RP07333 972 aa31.95■■■□□ 2.7
CCDC88C-205ENST00000553403 IL27Q8NEV9 243 aa31.95■■■□□ 2.7
CCDC88C-205ENST00000553403 DBNLQ9UJU6 430 aaKnown RBP31.95■■■□□ 2.7
CCDC88C-205ENST00000553403 IL25Q9H293 177 aa31.94■■■□□ 2.7
CCDC88C-205ENST00000553403 DDIT3P35638 169 aa31.93■■■□□ 2.7
CCDC88C-205ENST00000553403 CRKLP46109 303 aaKnown RBP31.93■■■□□ 2.7
CCDC88C-205ENST00000553403 FAM89AQ96GI7 184 aa31.93■■■□□ 2.7
CCDC88C-205ENST00000553403 ZNF831Q5JPB2 1677 aa31.93■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms