RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 WDR33Q9C0J8 1336 aaKnown RBP13.28□□□□□ -0.28
TRIM3-211ENST00000532542 GNL3LQ9NVN8 582 aaKnown RBP13.28□□□□□ -0.28
TRIM3-211ENST00000532542 DZIP3Q86Y13 1208 aaKnown RBP13.28□□□□□ -0.28
TRIM3-211ENST00000532542 HEG1Q9ULI3 1381 aa13.28□□□□□ -0.28
TRIM3-211ENST00000532542 SOS2Q07890 1332 aaPredicted RBP13.28□□□□□ -0.28
TRIM3-211ENST00000532542 C8orf37Q96NL8 207 aa13.27□□□□□ -0.28
TRIM3-211ENST00000532542 CPDO75976 1380 aa13.27□□□□□ -0.28
TRIM3-211ENST00000532542 EPB41L2O43491 1005 aaKnown RBP13.27□□□□□ -0.29
TRIM3-211ENST00000532542 TFCP2Q12800 502 aa13.27□□□□□ -0.29
TRIM3-211ENST00000532542 POLA2Q14181 598 aa13.27□□□□□ -0.29
TRIM3-211ENST00000532542 U3KPZ7 1027 aaPredicted RBP13.27□□□□□ -0.29
TRIM3-211ENST00000532542 OVOS2A0A0G2JMS6 1433 aa13.27□□□□□ -0.29
TRIM3-211ENST00000532542 PDIA4P13667 645 aaKnown RBP13.27□□□□□ -0.29
TRIM3-211ENST00000532542 CPLX1O14810 134 aa13.26□□□□□ -0.29
TRIM3-211ENST00000532542 PRIM1P49642 420 aaKnown RBP13.26□□□□□ -0.29
TRIM3-211ENST00000532542 SYNE3Q6ZMZ3 975 aa13.26□□□□□ -0.29
TRIM3-211ENST00000532542 LIMCH1Q9UPQ0 1083 aa13.26□□□□□ -0.29
TRIM3-211ENST00000532542 SH2B1Q9NRF2 756 aaPredicted RBP13.26□□□□□ -0.29
TRIM3-211ENST00000532542 GOLIM4O00461 696 aa13.26□□□□□ -0.29
TRIM3-211ENST00000532542 HMGB2P26583 209 aaKnown RBP13.26□□□□□ -0.29
TRIM3-211ENST00000532542 MBD3O95983 291 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 HMG20BQ9P0W2 317 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 RAD50Q92878 1312 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 PXDNLA1KZ92 1463 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 ADAMTSL3P82987 1691 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 KIF1AQ12756 1690 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 KLHDC4Q8TBB5 520 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 TNPO1Q92973 898 aaKnown RBP13.25□□□□□ -0.29
TRIM3-211ENST00000532542 TCIRG1Q13488 830 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 TTLL7Q6ZT98 887 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 EYA2O00167 538 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 ZPR1O75312 459 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 MTX1Q13505 466 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 TNNI3KQ59H18 835 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 FPGT-TNNI3KV9GXZ4 949 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 PIK3C2AO00443 1686 aa13.25□□□□□ -0.29
TRIM3-211ENST00000532542 TOPAZ1Q8N9V7 1692 aa13.24□□□□□ -0.29
TRIM3-211ENST00000532542 SGSM2O43147 1006 aa13.24□□□□□ -0.29
TRIM3-211ENST00000532542 SLC5A1P13866 664 aa13.24□□□□□ -0.29
TRIM3-211ENST00000532542 PLCB2Q00722 1185 aa13.24□□□□□ -0.29
TRIM3-211ENST00000532542 TMX3Q96JJ7 454 aa13.24□□□□□ -0.29
TRIM3-211ENST00000532542 BICDL1Q6ZP65 573 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 DDX46Q7L014 1031 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 COPRSQ9NQ92 184 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 ADCY9O60503 1353 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 IRS4O14654 1257 aaPredicted RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 PRPF40AO75400 957 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 ATP10DQ9P241 1426 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 IDH1O75874 414 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 HMGB1P09429 215 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 ATP2B3Q16720 1220 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 VSIG10Q8N0Z9 540 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 FAM89AQ96GI7 184 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 ASAP1Q9ULH1 1129 aa13.23□□□□□ -0.29
TRIM3-211ENST00000532542 NMIQ13287 307 aaPredicted RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 CDC5LQ99459 802 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 NOL10Q9BSC4 688 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 RBM8AQ9Y5S9 174 aaKnown RBP13.23□□□□□ -0.29
TRIM3-211ENST00000532542 SSFA2P28290 1259 aa13.22□□□□□ -0.29
TRIM3-211ENST00000532542 TTF1Q15361 905 aaPredicted RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 IMMTQ16891 758 aaKnown RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 CCDC152Q4G0S7 254 aa13.22□□□□□ -0.29
TRIM3-211ENST00000532542 ISY1Q9ULR0 285 aaKnown RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 DHX16O60231 1041 aaKnown RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 ZFYP08048 801 aaPredicted RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 UTP14AQ9BVJ6 771 aaKnown RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 CHD2O14647 1828 aaKnown RBP13.22□□□□□ -0.29
TRIM3-211ENST00000532542 NFXL1Q6ZNB6 911 aa13.22□□□□□ -0.29
TRIM3-211ENST00000532542 NACAP1Q9BZK3 213 aa13.22□□□□□ -0.29
TRIM3-211ENST00000532542 KDM4FA0A1W2PPD8 638 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 ERICH2A1L162 156 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 MCMDC2Q4G0Z9 681 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 EAF2Q96CJ1 260 aaPredicted RBP13.21□□□□□ -0.29
TRIM3-211ENST00000532542 G3V3G9 751 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 MRE11P49959 708 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 DCAF8Q5TAQ9 597 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 PAG1Q9NWQ8 432 aa13.21□□□□□ -0.29
TRIM3-211ENST00000532542 IGKV5-2P06315 115 aa13.21□□□□□ -0.3
TRIM3-211ENST00000532542 SF3A1Q15459 793 aaKnown RBP13.21□□□□□ -0.3
TRIM3-211ENST00000532542 CCDC87Q9NVE4 849 aa13.21□□□□□ -0.3
TRIM3-211ENST00000532542 NIP7Q9Y221 180 aaKnown RBP eCLIP13.21□□□□□ -0.3
TRIM3-211ENST00000532542 UQCRFS1P1P0C7P4 283 aa13.21□□□□□ -0.3
TRIM3-211ENST00000532542 LARP1BQ659C4 914 aaKnown RBP13.21□□□□□ -0.3
TRIM3-211ENST00000532542 PARP10Q53GL7 1025 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 AMOTL1Q8IY63 956 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 PIGBQ92521 554 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 DBNDD2Q9BQY9 259 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 SNRKQ9NRH2 765 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 THRAP3Q9Y2W1 955 aaKnown RBP13.2□□□□□ -0.3
TRIM3-211ENST00000532542 ZNF142P52746 1687 aaPredicted RBP13.2□□□□□ -0.3
TRIM3-211ENST00000532542 CCDC171Q6TFL3 1326 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 CCDC83Q8IWF9 413 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 ATP5JP18859 108 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 MAP3K12Q12852 859 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 STK3Q13188 491 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 SART3Q15020 963 aaKnown RBP13.2□□□□□ -0.3
TRIM3-211ENST00000532542 AIDAQ96BJ3 306 aa13.2□□□□□ -0.3
TRIM3-211ENST00000532542 CAVIN1Q6NZI2 390 aaKnown RBP13.19□□□□□ -0.3
TRIM3-211ENST00000532542 RGPD8O14715 1765 aaPredicted RBP13.19□□□□□ -0.3
TRIM3-211ENST00000532542 SH3TC1Q8TE82 1336 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms