RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 PSME1Q06323 249 aa12.78□□□□□ -0.36
PRPF3-206ENST00000493553 PROSER2Q86WR7 435 aaPredicted RBP12.78□□□□□ -0.36
PRPF3-206ENST00000493553 ABTB2Q8N961 1025 aa12.78□□□□□ -0.36
PRPF3-206ENST00000493553 CHMP4AQ9BY43 222 aa12.78□□□□□ -0.36
PRPF3-206ENST00000493553 C19orf44Q9H6X5 657 aa12.78□□□□□ -0.36
PRPF3-206ENST00000493553 MAP3K19Q56UN5 1328 aa12.78□□□□□ -0.36
PRPF3-206ENST00000493553 DCCP43146 1447 aa12.78□□□□□ -0.36
PRPF3-206ENST00000493553 TNFRSF10AO00220 468 aa12.77□□□□□ -0.37
PRPF3-206ENST00000493553 HMOX1P09601 288 aa12.77□□□□□ -0.37
PRPF3-206ENST00000493553 FTSJ3Q8IY81 847 aaKnown RBP12.77□□□□□ -0.37
PRPF3-206ENST00000493553 GAS2L2Q8NHY3 880 aa12.77□□□□□ -0.37
PRPF3-206ENST00000493553 DDRGK1Q96HY6 314 aa12.77□□□□□ -0.37
PRPF3-206ENST00000493553 SMC4Q9NTJ3 1288 aa12.77□□□□□ -0.37
PRPF3-206ENST00000493553 USP54Q70EL1 1684 aa12.77□□□□□ -0.37
PRPF3-206ENST00000493553 CCNYL3P0C7X3 344 aa12.76□□□□□ -0.37
PRPF3-206ENST00000493553 EXOSC9Q06265 439 aaKnown RBP12.76□□□□□ -0.37
PRPF3-206ENST00000493553 SULT6B1Q6IMI4 303 aa12.76□□□□□ -0.37
PRPF3-206ENST00000493553 ARHGAP45Q92619 1136 aa12.76□□□□□ -0.37
PRPF3-206ENST00000493553 CLUAP1Q96AJ1 413 aa12.76□□□□□ -0.37
PRPF3-206ENST00000493553 CFAP99D6REC4 459 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 ZNF853P0CG23 659 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 KDRP35968 1356 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 CLK2P49760 499 aaKnown RBP12.75□□□□□ -0.37
PRPF3-206ENST00000493553 SOS1Q07889 1333 aaPredicted RBP12.75□□□□□ -0.37
PRPF3-206ENST00000493553 FOXC1Q12948 553 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 ESCO1Q5FWF5 840 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 DZIP1LQ8IYY4 767 aaKnown RBP12.75□□□□□ -0.37
PRPF3-206ENST00000493553 CABLES1Q8TDN4 633 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 RTF1Q92541 710 aaKnown RBP12.75□□□□□ -0.37
PRPF3-206ENST00000493553 FRAT1Q92837 279 aaPredicted RBP12.75□□□□□ -0.37
PRPF3-206ENST00000493553 PHACTR3Q96KR7 559 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 BABAM1Q9NWV8 329 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 DDX19BQ9UMR2 479 aa12.75□□□□□ -0.37
PRPF3-206ENST00000493553 KDM2BQ8NHM5 1336 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 LILRB3O75022 631 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 CSPP1Q1MSJ5 1256 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 HSP90AB2PQ58FF8 381 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 C20orf194Q5TEA3 1177 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 FAM117AQ9C073 453 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 EVA1BQ9NVM1 165 aa12.74□□□□□ -0.37
PRPF3-206ENST00000493553 IGSF1Q8N6C5 1336 aa12.73□□□□□ -0.37
PRPF3-206ENST00000493553 WNT7AO00755 349 aa12.73□□□□□ -0.37
PRPF3-206ENST00000493553 LCE2BO14633 110 aa12.73□□□□□ -0.37
PRPF3-206ENST00000493553 ATF3P18847 181 aa12.73□□□□□ -0.37
PRPF3-206ENST00000493553 FBLN1P23142 703 aa12.73□□□□□ -0.37
PRPF3-206ENST00000493553 ATF7IPQ6VMQ6 1270 aa12.73□□□□□ -0.37
PRPF3-206ENST00000493553 TSR2Q969E8 191 aaKnown RBP12.73□□□□□ -0.37
PRPF3-206ENST00000493553 RWDD1Q9H446 243 aaPredicted RBP12.73□□□□□ -0.37
PRPF3-206ENST00000493553 KIAA0232Q92628 1395 aa12.72□□□□□ -0.37
PRPF3-206ENST00000493553 WNT7BP56706 349 aa12.72□□□□□ -0.37
PRPF3-206ENST00000493553 MVPQ14764 893 aaKnown RBP12.72□□□□□ -0.37
PRPF3-206ENST00000493553 QPCTQ16769 361 aa12.72□□□□□ -0.37
PRPF3-206ENST00000493553 PTCRAQ6ISU1 281 aaPredicted RBP12.72□□□□□ -0.37
PRPF3-206ENST00000493553 TRAF7Q6Q0C0 670 aa12.72□□□□□ -0.37
PRPF3-206ENST00000493553 LYPD8Q6UX82 237 aa12.72□□□□□ -0.37
PRPF3-206ENST00000493553 IP6K1Q92551 441 aa12.72□□□□□ -0.37
PRPF3-206ENST00000493553 MST1RQ04912 1400 aa12.71□□□□□ -0.37
PRPF3-206ENST00000493553 DGAT1O75907 488 aa12.71□□□□□ -0.37
PRPF3-206ENST00000493553 HOXC9P31274 260 aa12.71□□□□□ -0.37
PRPF3-206ENST00000493553 SH3D19Q5HYK7 790 aa12.71□□□□□ -0.37
PRPF3-206ENST00000493553 SSH1Q8WYL5 1049 aa12.71□□□□□ -0.37
PRPF3-206ENST00000493553 API5Q9BZZ5 524 aaKnown RBP12.71□□□□□ -0.37
PRPF3-206ENST00000493553 POLR3EQ9NVU0 708 aa12.71□□□□□ -0.37
PRPF3-206ENST00000493553 KCNH2Q12809 1159 aa12.7□□□□□ -0.38
PRPF3-206ENST00000493553 TOR4AQ9NXH8 423 aa12.7□□□□□ -0.38
PRPF3-206ENST00000493553 COG6Q9Y2V7 657 aa12.7□□□□□ -0.38
PRPF3-206ENST00000493553 PIK3C2AO00443 1686 aa12.7□□□□□ -0.38
PRPF3-206ENST00000493553 KIF1AQ12756 1690 aa12.7□□□□□ -0.38
PRPF3-206ENST00000493553 NUTM2BA6NNL0 878 aaPredicted RBP12.69□□□□□ -0.38
PRPF3-206ENST00000493553 NUTM2EB1AL46 878 aaPredicted RBP12.69□□□□□ -0.38
PRPF3-206ENST00000493553 CHL1O00533 1208 aa12.69□□□□□ -0.38
PRPF3-206ENST00000493553 SKIV2LQ15477 1246 aaKnown RBP12.69□□□□□ -0.38
PRPF3-206ENST00000493553 PKDCCQ504Y2 493 aa12.69□□□□□ -0.38
PRPF3-206ENST00000493553 NUTM2AQ8IVF1 878 aaPredicted RBP12.69□□□□□ -0.38
PRPF3-206ENST00000493553 PANK1Q8TE04 598 aa12.69□□□□□ -0.38
PRPF3-206ENST00000493553 LAS1LQ9Y4W2 734 aaKnown RBP12.69□□□□□ -0.38
PRPF3-206ENST00000493553 PLEKHG2Q9H7P9 1386 aa12.69□□□□□ -0.38
PRPF3-206ENST00000493553 C1orf167Q5SNV9 1468 aa12.68□□□□□ -0.38
PRPF3-206ENST00000493553 VAMP4O75379 141 aa12.68□□□□□ -0.38
PRPF3-206ENST00000493553 SKOR1P84550 965 aa12.68□□□□□ -0.38
PRPF3-206ENST00000493553 TWISTNBQ3B726 338 aaPredicted RBP12.68□□□□□ -0.38
PRPF3-206ENST00000493553 TPRNQ4KMQ1 711 aa12.68□□□□□ -0.38
PRPF3-206ENST00000493553 MBIPQ9NS73 344 aa12.68□□□□□ -0.38
PRPF3-206ENST00000493553 RGPD1P0DJD0 1748 aa12.68□□□□□ -0.38
PRPF3-206ENST00000493553 GNAT3A8MTJ3 354 aa12.67□□□□□ -0.38
PRPF3-206ENST00000493553 ANP32AP39687 249 aaKnown RBP12.67□□□□□ -0.38
PRPF3-206ENST00000493553 KRT28Q7Z3Y7 464 aa12.67□□□□□ -0.38
PRPF3-206ENST00000493553 CYP4X1Q8N118 509 aa12.67□□□□□ -0.38
PRPF3-206ENST00000493553 UNC93B1Q9H1C4 597 aa12.67□□□□□ -0.38
PRPF3-206ENST00000493553 MSH6P52701 1360 aa12.67□□□□□ -0.38
PRPF3-206ENST00000493553 USP19O94966 1318 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 NPHP3Q7Z494 1330 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 FAM187AA6NFU0 413 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 TRIM27P14373 513 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 AMOTQ4VCS5 1084 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 AEBP1Q8IUX7 1158 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 NOB1Q9ULX3 412 aaKnown RBP12.66□□□□□ -0.38
PRPF3-206ENST00000493553 TMEM94Q12767 1356 aa12.66□□□□□ -0.38
PRPF3-206ENST00000493553 PEAK1Q9H792 1746 aa12.65□□□□□ -0.38
PRPF3-206ENST00000493553 HDAC1Q13547 482 aaPredicted RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms