RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 PPP1R42Q7Z4L9 355 aa14.32□□□□□ -0.12
C9orf3-220ENST00000489318 NLRP10Q86W26 655 aa14.32□□□□□ -0.12
C9orf3-220ENST00000489318 TBC1D2BQ9UPU7 963 aa14.32□□□□□ -0.12
C9orf3-220ENST00000489318 UBN2Q6ZU65 1347 aa14.32□□□□□ -0.12
C9orf3-220ENST00000489318 GNPATO15228 680 aa14.31□□□□□ -0.12
C9orf3-220ENST00000489318 PCCAP05165 728 aaPredicted RBP14.31□□□□□ -0.12
C9orf3-220ENST00000489318 ADRA2BP18089 450 aa14.31□□□□□ -0.12
C9orf3-220ENST00000489318 PLA2G12BQ9BX93 195 aa14.31□□□□□ -0.12
C9orf3-220ENST00000489318 BICC1Q9H694 974 aaKnown RBP14.31□□□□□ -0.12
C9orf3-220ENST00000489318 SRGAP3O43295 1099 aa14.3□□□□□ -0.12
C9orf3-220ENST00000489318 TXNRD1Q16881 649 aa14.3□□□□□ -0.12
C9orf3-220ENST00000489318 CHD1LQ86WJ1 897 aa14.3□□□□□ -0.12
C9orf3-220ENST00000489318 PROM2Q8N271 834 aa14.3□□□□□ -0.12
C9orf3-220ENST00000489318 ZBTB38Q8NAP3 1195 aaPredicted RBP14.3□□□□□ -0.12
C9orf3-220ENST00000489318 NARFQ9UHQ1 456 aa14.3□□□□□ -0.12
C9orf3-220ENST00000489318 ZNF652Q9Y2D9 606 aa14.3□□□□□ -0.12
C9orf3-220ENST00000489318 NOP58Q9Y2X3 529 aaKnown RBP14.3□□□□□ -0.12
C9orf3-220ENST00000489318 RTCBQ9Y3I0 505 aaKnown RBP14.3□□□□□ -0.12
C9orf3-220ENST00000489318 PARP10Q53GL7 1025 aa14.29□□□□□ -0.12
C9orf3-220ENST00000489318 EPHA10Q5JZY3 1008 aa14.29□□□□□ -0.12
C9orf3-220ENST00000489318 SKAP1Q86WV1 359 aa14.29□□□□□ -0.12
C9orf3-220ENST00000489318 PDE4AP27815 886 aa14.28□□□□□ -0.12
C9orf3-220ENST00000489318 SSFA2P28290 1259 aa14.28□□□□□ -0.12
C9orf3-220ENST00000489318 FOXO4P98177 505 aa14.28□□□□□ -0.12
C9orf3-220ENST00000489318 AMIGO3Q86WK7 504 aa14.28□□□□□ -0.12
C9orf3-220ENST00000489318 AK7Q96M32 723 aa14.28□□□□□ -0.12
C9orf3-220ENST00000489318 USP42Q9H9J4 1324 aaKnown RBP14.28□□□□□ -0.12
C9orf3-220ENST00000489318 BCL2L12Q9HB09 334 aa14.28□□□□□ -0.12
C9orf3-220ENST00000489318 APBA3O96018 575 aa14.27□□□□□ -0.13
C9orf3-220ENST00000489318 RFX5P48382 616 aaPredicted RBP14.27□□□□□ -0.13
C9orf3-220ENST00000489318 RAB11FIP3O75154 756 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 NTSR2O95665 410 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 GPTP24298 496 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 HSP90AB4PQ58FF6 505 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 ANKRD45Q5TZF3 282 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 ARHGEF1Q92888 912 aaKnown RBP14.26□□□□□ -0.13
C9orf3-220ENST00000489318 ARXQ96QS3 562 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 COPRSQ9NQ92 184 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 EXOC6BQ9Y2D4 811 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 NRXN2Q9P2S2 1712 aa14.26□□□□□ -0.13
C9orf3-220ENST00000489318 RIC1Q4ADV7 1423 aa14.25□□□□□ -0.13
C9orf3-220ENST00000489318 SALL3Q9BXA9 1300 aa14.25□□□□□ -0.13
C9orf3-220ENST00000489318 RGS3P49796 1198 aa14.25□□□□□ -0.13
C9orf3-220ENST00000489318 ILDR1Q86SU0 546 aaPredicted RBP14.25□□□□□ -0.13
C9orf3-220ENST00000489318 AKT1S1Q96B36 256 aa14.25□□□□□ -0.13
C9orf3-220ENST00000489318 LNPKQ9C0E8 428 aa14.25□□□□□ -0.13
C9orf3-220ENST00000489318 SH3TC1Q8TE82 1336 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 CSF1RP07333 972 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 TRAPPC3LQ5T215 181 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 SUSD4Q5VX71 490 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 USPL1Q5W0Q7 1092 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 JARID2Q92833 1246 aaPredicted RBP14.24□□□□□ -0.13
C9orf3-220ENST00000489318 FAM89AQ96GI7 184 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 LRRCC1Q9C099 1032 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 NIP7Q9Y221 180 aaKnown RBP eCLIP14.24□□□□□ -0.13
C9orf3-220ENST00000489318 A0A1B0GUL6 1792 aa14.24□□□□□ -0.13
C9orf3-220ENST00000489318 TNRC6CQ9HCJ0 1690 aaKnown RBP14.23□□□□□ -0.13
C9orf3-220ENST00000489318 RTL9Q8NET4 1388 aa14.23□□□□□ -0.13
C9orf3-220ENST00000489318 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.23□□□□□ -0.13
C9orf3-220ENST00000489318 SURF6O75683 361 aaKnown RBP14.23□□□□□ -0.13
C9orf3-220ENST00000489318 LMBR1LQ6UX01 489 aa14.23□□□□□ -0.13
C9orf3-220ENST00000489318 ERC1Q8IUD2 1116 aa14.23□□□□□ -0.13
C9orf3-220ENST00000489318 UTP14AQ9BVJ6 771 aaKnown RBP14.23□□□□□ -0.13
C9orf3-220ENST00000489318 SRP68Q9UHB9 627 aaKnown RBP14.23□□□□□ -0.13
C9orf3-220ENST00000489318 TRMT112Q9UI30 125 aaKnown RBP14.23□□□□□ -0.13
C9orf3-220ENST00000489318 ZPR1O75312 459 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 PTPN12Q05209 780 aaKnown RBP14.22□□□□□ -0.13
C9orf3-220ENST00000489318 ZNF827Q17R98 1081 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 RHPN1Q8TCX5 695 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 KIF1BPQ96EK5 621 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 CAMKK2Q96RR4 588 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 SPEF2Q9C093 1822 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 CARMIL3Q8ND23 1372 aa14.22□□□□□ -0.13
C9orf3-220ENST00000489318 ARAP2Q8WZ64 1704 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 IRS4O14654 1257 aaPredicted RBP14.21□□□□□ -0.13
C9orf3-220ENST00000489318 PDE8AO60658 829 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 RFC4P35249 363 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 CTSWP56202 376 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 RTL5Q5HYW3 569 aaPredicted RBP14.21□□□□□ -0.13
C9orf3-220ENST00000489318 TBC1D9BQ66K14 1250 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 SMIM5Q71RC9 77 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 OSBPL3Q9H4L5 887 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 FBXO3Q9UK99 471 aa14.21□□□□□ -0.13
C9orf3-220ENST00000489318 PA2G4Q9UQ80 394 aaKnown RBP14.21□□□□□ -0.13
C9orf3-220ENST00000489318 PHF14O94880 888 aa14.2□□□□□ -0.14
C9orf3-220ENST00000489318 HSP90B1P14625 803 aaKnown RBP14.2□□□□□ -0.14
C9orf3-220ENST00000489318 PLEKHM2Q8IWE5 1019 aa14.2□□□□□ -0.14
C9orf3-220ENST00000489318 TTLL11Q8NHH1 800 aa14.2□□□□□ -0.14
C9orf3-220ENST00000489318 ZBTB47Q9UFB7 747 aaPredicted RBP14.2□□□□□ -0.14
C9orf3-220ENST00000489318 AOX1Q06278 1338 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 SMARCA5O60264 1052 aaPredicted RBP14.19□□□□□ -0.14
C9orf3-220ENST00000489318 CIAO1O76071 339 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 SASH1O94885 1247 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 GYS1P13807 737 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 FAM161AQ3B820 660 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 SYNE4Q8N205 404 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 FLAD1Q8NFF5 587 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 NYXQ9GZU5 481 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 ABCC12Q96J65 1359 aa14.19□□□□□ -0.14
C9orf3-220ENST00000489318 BMP2KLQ5H9B9 411 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms