RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 CCDC150Q8NCX0 1101 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 MRFAP1L1Q96HT8 127 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 FMNL2Q96PY5 1086 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 EMILIN1Q9Y6C2 1016 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 KIF1BO60333 1816 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 ELP1O95163 1332 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 USP32Q8NFA0 1604 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 RAB11FIP3O75154 756 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 LARGE1O95461 756 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 UNC5CLQ8IV45 518 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 NECTIN2Q92692 538 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 MROH1Q8NDA8 1641 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 A0A1B0GUL7 405 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 UBTFL1P0CB47 393 aaPredicted RBP7.3□□□□□ -1.24
VPS13D-209ENST00000487188 PSMA5P28066 241 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 AOPEPQ8N6M6 819 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 GPATCH3Q96I76 525 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 PREX1Q8TCU6 1659 aa7.3□□□□□ -1.24
VPS13D-209ENST00000487188 CTAGE5O15320 804 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SEC31AO94979 1220 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 PLPPR3Q6T4P5 718 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SDF4Q9BRK5 362 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 ARFGAP3Q9NP61 516 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 CABP1Q9NZU7 370 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 TSPYL4Q9UJ04 414 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SGSM2O43147 1006 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 NR1I2O75469 434 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 IVLP07476 585 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 ZNF853P0CG23 659 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 EVCP57679 992 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 DHX8Q14562 1220 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SMC1AQ14683 1233 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 NYAP1Q6ZVC0 841 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 TEX2Q8IWB9 1127 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 LEO1Q8WVC0 666 aaPredicted RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SMARCE1Q969G3 411 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 RRP15Q9Y3B9 282 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 TET3O43151 1660 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 CLTCQ00610 1675 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 TRIM66O15016 1216 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 EPB41L2O43491 1005 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 HSP90B2PQ58FF3 399 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 VPS53Q5VIR6 699 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 MCM10Q7L590 875 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 RASEFQ8IZ41 740 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SLC26A8Q96RN1 970 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 CARD6Q9BX69 1037 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 SRRTQ9BXP5 876 aaKnown RBP7.29□□□□□ -1.24
VPS13D-209ENST00000487188 ZNF446Q9NWS9 450 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 POLKQ9UBT6 870 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 CFAP45Q9UL16 551 aa7.29□□□□□ -1.24
VPS13D-209ENST00000487188 MUM1L1Q5H9M0 696 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 ICE2Q659A1 982 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 BLOC1S2Q6QNY1 142 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 GOLGA5Q8TBA6 731 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 DRC1Q96MC2 740 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 PRAM1Q96QH2 718 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 FHOD1Q9Y613 1164 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 DHX16O60231 1041 aaKnown RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 TUBB4AP04350 444 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 H2AFXP16104 143 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 PLA2G4AP47712 749 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 ANKRD1Q15327 319 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 SF3A1Q15459 793 aaKnown RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 RGS22Q8NE09 1264 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 CHMP4CQ96CF2 233 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 MYCBPQ99417 103 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 COL3A1P02461 1466 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 EIF3JO75822 258 aaKnown RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 ST5P78524 1137 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 C11orf57Q6ZUT1 292 aaPredicted RBP7.28□□□□□ -1.24
VPS13D-209ENST00000487188 COG3Q96JB2 828 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 PPP1R13BQ96KQ4 1090 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 TTC14Q96N46 770 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 MYO3AQ8NEV4 1616 aa7.28□□□□□ -1.24
VPS13D-209ENST00000487188 RPGRIP1LQ68CZ1 1315 aa7.27□□□□□ -1.24
VPS13D-209ENST00000487188 CCAR1Q8IX12 1150 aaKnown RBP7.27□□□□□ -1.24
VPS13D-209ENST00000487188 TCEANC2Q96MN5 208 aa7.27□□□□□ -1.24
VPS13D-209ENST00000487188 HYPKQ9NX55 129 aa7.27□□□□□ -1.24
VPS13D-209ENST00000487188 ORC3Q9UBD5 711 aaPredicted RBP7.27□□□□□ -1.24
VPS13D-209ENST00000487188 DEPDC5O75140 1603 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 AOX1Q06278 1338 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 PNMA6EA0A0J9YXQ4 647 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 ME1P48163 572 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 ATP8B2P98198 1209 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 ME3Q16798 604 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 SARM1Q6SZW1 724 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 MIS18AQ9NYP9 233 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 CCZ1BP86790 482 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 CCZ1P86791 482 aaPredicted RBP7.27□□□□□ -1.25
VPS13D-209ENST00000487188 SULT6B1Q6IMI4 303 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 LARP1Q6PKG0 1096 aaKnown RBP7.27□□□□□ -1.25
VPS13D-209ENST00000487188 DDX11Q96FC9 970 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 ZCCHC17Q9NP64 241 aaKnown RBP7.27□□□□□ -1.25
VPS13D-209ENST00000487188 VPS18Q9P253 973 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 GYS2P54840 703 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 RRS1Q15050 365 aaKnown RBP7.27□□□□□ -1.25
VPS13D-209ENST00000487188 CDK19Q9BWU1 502 aa7.27□□□□□ -1.25
VPS13D-209ENST00000487188 LSG1Q9H089 658 aaKnown RBP7.27□□□□□ -1.25
VPS13D-209ENST00000487188 IFNKQ9P0W0 207 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 519.8 ms