RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 HDAC5Q9UQL6 1122 aa10.5□□□□□ -0.73
SF3A1-208ENST00000485618 POLRMTO00411 1230 aaKnown RBP10.49□□□□□ -0.73
SF3A1-208ENST00000485618 MS4A1P11836 297 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 PDE6BP35913 854 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 BRPF1P55201 1214 aaPredicted RBP10.49□□□□□ -0.73
SF3A1-208ENST00000485618 DDR1Q08345 913 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 HLFQ16534 295 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 DALRD3Q5D0E6 543 aaKnown RBP10.49□□□□□ -0.73
SF3A1-208ENST00000485618 C16orf71Q8IYS4 520 aaPredicted RBP10.49□□□□□ -0.73
SF3A1-208ENST00000485618 ZNF34Q8IZ26 560 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 CCDC191Q8NCU4 936 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 SSH1Q8WYL5 1049 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 ARHGAP45Q92619 1136 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 METTL22Q9BUU2 404 aaPredicted RBP10.49□□□□□ -0.73
SF3A1-208ENST00000485618 BRIP1Q9BX63 1249 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 BCL2L12Q9HB09 334 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 PIM2Q9P1W9 311 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 MAP3K2Q9Y2U5 619 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 KIF16BQ96L93 1317 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 WDR90Q96KV7 1748 aa10.49□□□□□ -0.73
SF3A1-208ENST00000485618 KCNA3P22001 575 aa10.48□□□□□ -0.73
SF3A1-208ENST00000485618 GPTP24298 496 aa10.48□□□□□ -0.73
SF3A1-208ENST00000485618 RARSP54136 660 aaKnown RBP10.48□□□□□ -0.73
SF3A1-208ENST00000485618 MRPL50Q8N5N7 158 aaKnown RBP10.48□□□□□ -0.73
SF3A1-208ENST00000485618 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.48□□□□□ -0.73
SF3A1-208ENST00000485618 DNAAF4Q8WXU2 420 aa10.48□□□□□ -0.73
SF3A1-208ENST00000485618 CWC25Q9NXE8 425 aaPredicted RBP10.48□□□□□ -0.73
SF3A1-208ENST00000485618 RNF181Q9P0P0 153 aa10.48□□□□□ -0.73
SF3A1-208ENST00000485618 TNRC6CQ9HCJ0 1690 aaKnown RBP10.47□□□□□ -0.73
SF3A1-208ENST00000485618 H0YIN7 160 aa10.47□□□□□ -0.73
SF3A1-208ENST00000485618 CHRNA5P30532 468 aa10.47□□□□□ -0.73
SF3A1-208ENST00000485618 COL13A1Q5TAT6 717 aaPredicted RBP10.47□□□□□ -0.73
SF3A1-208ENST00000485618 LINS1Q8NG48 757 aa10.47□□□□□ -0.73
SF3A1-208ENST00000485618 MYD88Q99836 296 aa10.47□□□□□ -0.73
SF3A1-208ENST00000485618 TRMT112Q9UI30 125 aaKnown RBP10.47□□□□□ -0.73
SF3A1-208ENST00000485618 KDM2BQ8NHM5 1336 aa10.47□□□□□ -0.73
SF3A1-208ENST00000485618 SH3TC1Q8TE82 1336 aa10.47□□□□□ -0.73
SF3A1-208ENST00000485618 FAM177BA6PVY3 158 aa10.46□□□□□ -0.73
SF3A1-208ENST00000485618 CCT4P50991 539 aaKnown RBP10.46□□□□□ -0.73
SF3A1-208ENST00000485618 SLC4A10Q6U841 1118 aa10.46□□□□□ -0.73
SF3A1-208ENST00000485618 G2E3Q7L622 706 aa10.46□□□□□ -0.73
SF3A1-208ENST00000485618 NLRP10Q86W26 655 aa10.46□□□□□ -0.73
SF3A1-208ENST00000485618 RBM46Q8TBY0 533 aaKnown RBP10.46□□□□□ -0.73
SF3A1-208ENST00000485618 NLRP3Q96P20 1036 aa10.46□□□□□ -0.73
SF3A1-208ENST00000485618 ISCA1Q9BUE6 129 aa10.46□□□□□ -0.73
SF3A1-208ENST00000485618 TMX4Q9H1E5 349 aaPredicted RBP10.46□□□□□ -0.73
SF3A1-208ENST00000485618 IBTKQ9P2D0 1353 aaPredicted RBP10.46□□□□□ -0.74
SF3A1-208ENST00000485618 ATP5J2-PTCD1G3V325 749 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 ALDH1L1O75891 902 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 PRELPP51888 382 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 SUSD4Q5VX71 490 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 PRR5LQ6MZQ0 368 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 ZBTB38Q8NAP3 1195 aaPredicted RBP10.45□□□□□ -0.74
SF3A1-208ENST00000485618 FRAT1Q92837 279 aaPredicted RBP10.45□□□□□ -0.74
SF3A1-208ENST00000485618 BCL2L13Q9BXK5 485 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 SRCIN1Q9C0H9 1055 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 C9orf78Q9NZ63 289 aaPredicted RBP10.45□□□□□ -0.74
SF3A1-208ENST00000485618 RCAN3Q9UKA8 241 aa10.45□□□□□ -0.74
SF3A1-208ENST00000485618 NOB1Q9ULX3 412 aaKnown RBP10.45□□□□□ -0.74
SF3A1-208ENST00000485618 HTRA3P83110 453 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 RASSF7Q02833 373 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 FSTL1Q12841 308 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 SLC10A5Q5PT55 438 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 ZKSCAN2Q63HK3 967 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 FTSJ3Q8IY81 847 aaKnown RBP10.44□□□□□ -0.74
SF3A1-208ENST00000485618 DNAJC5GQ8N7S2 189 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 CHMP4BQ9H444 224 aaKnown RBP10.44□□□□□ -0.74
SF3A1-208ENST00000485618 DLEC1Q9Y238 1755 aa10.44□□□□□ -0.74
SF3A1-208ENST00000485618 NUP98P52948 1817 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 NEURL1BA8MQ27 555 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 NTSR2O95665 410 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 PCCAP05165 728 aaPredicted RBP10.43□□□□□ -0.74
SF3A1-208ENST00000485618 ALDH1B1P30837 517 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 GCKRQ14397 625 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 ATF7IPQ6VMQ6 1270 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 C2CD5Q86YS7 1000 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 TNS4Q8IZW8 715 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 RPGRQ92834 1020 aaKnown RBP10.43□□□□□ -0.74
SF3A1-208ENST00000485618 CNKSR1Q969H4 720 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 MASTLQ96GX5 879 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 RRAGCQ9HB90 399 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 TIAM2Q8IVF5 1701 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 NRXN2Q9P2S2 1712 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 SCN7AQ01118 1682 aa10.43□□□□□ -0.74
SF3A1-208ENST00000485618 UBN2Q6ZU65 1347 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 IRS4O14654 1257 aaPredicted RBP10.42□□□□□ -0.74
SF3A1-208ENST00000485618 BCAR3O75815 825 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 NPR1P16066 1061 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 ERFEQ4G0M1 354 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 STYK1Q6J9G0 422 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 TTLL6Q8N841 843 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 ZNF622Q969S3 477 aaKnown RBP eCLIP10.42□□□□□ -0.743e-7■□□□□ 11.1
SF3A1-208ENST00000485618 KLRG1Q96E93 195 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 FAM89AQ96GI7 184 aa10.42□□□□□ -0.74
SF3A1-208ENST00000485618 RBM17Q96I25 401 aaKnown RBP10.42□□□□□ -0.74
SF3A1-208ENST00000485618 AFDNP55196 1824 aaKnown RBP10.42□□□□□ -0.74
SF3A1-208ENST00000485618 ZC3H4Q9UPT8 1303 aaKnown RBP10.41□□□□□ -0.74
SF3A1-208ENST00000485618 F6X3S4 739 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 IGKV5-2P06315 115 aa10.41□□□□□ -0.74
SF3A1-208ENST00000485618 CCDC152Q4G0S7 254 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms