RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 LAMB2P55268 1798 aa15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 SRGAP3O43295 1099 aa15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 PCCAP05165 728 aaPredicted RBP15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 ILDR1Q86SU0 546 aaPredicted RBP15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 NLRP10Q86W26 655 aa15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 PROM2Q8N271 834 aa15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 BICC1Q9H694 974 aaKnown RBP15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 NARFQ9UHQ1 456 aa15.82■□□□□ 0.12
HMGB3P4-201ENST00000428776 ADRA2BP18089 450 aa15.81■□□□□ 0.12
HMGB3P4-201ENST00000428776 TRAPPC3LQ5T215 181 aa15.81■□□□□ 0.12
HMGB3P4-201ENST00000428776 CASZ1Q86V15 1759 aa15.81■□□□□ 0.12
HMGB3P4-201ENST00000428776 ZBTB38Q8NAP3 1195 aaPredicted RBP15.81■□□□□ 0.12
HMGB3P4-201ENST00000428776 TUBGCP6Q96RT7 1819 aa15.81■□□□□ 0.12
HMGB3P4-201ENST00000428776 COL24A1Q17RW2 1714 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 CDHR2Q9BYE9 1310 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 ZPR1O75312 459 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 GPTP24298 496 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 RABL6Q3YEC7 729 aaPredicted RBP15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 PARP10Q53GL7 1025 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 ANKRD45Q5TZF3 282 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 CHD1LQ86WJ1 897 aa15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 DDX60Q8IY21 1712 aaKnown RBP15.8■□□□□ 0.12
HMGB3P4-201ENST00000428776 JARID2Q92833 1246 aaPredicted RBP15.79■□□□□ 0.12
HMGB3P4-201ENST00000428776 ARHGEF1Q92888 912 aaKnown RBP15.79■□□□□ 0.12
HMGB3P4-201ENST00000428776 ZBTB47Q9UFB7 747 aaPredicted RBP15.79■□□□□ 0.12
HMGB3P4-201ENST00000428776 UBN2Q6ZU65 1347 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 RFC4P35249 363 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 FOXO4P98177 505 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 HSP90AB4PQ58FF6 505 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 EPHA10Q5JZY3 1008 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 SKAP1Q86WV1 359 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 PLA2G12BQ9BX93 195 aa15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 TRMT112Q9UI30 125 aaKnown RBP15.78■□□□□ 0.12
HMGB3P4-201ENST00000428776 QSER1Q2KHR3 1735 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 RAB11FIP3O75154 756 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 SURF6O75683 361 aaKnown RBP15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 SSFA2P28290 1259 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 RGS3P49796 1198 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 RTL5Q5HYW3 569 aaPredicted RBP15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 USPL1Q5W0Q7 1092 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 FAM89AQ96GI7 184 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 NIP7Q9Y221 180 aaKnown RBP eCLIP15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 EXOC6BQ9Y2D4 811 aa15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 NOP58Q9Y2X3 529 aaKnown RBP15.77■□□□□ 0.12
HMGB3P4-201ENST00000428776 USP42Q9H9J4 1324 aaKnown RBP15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 SUSD4Q5VX71 490 aa15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 LMBR1LQ6UX01 489 aa15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 AMIGO3Q86WK7 504 aa15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 UTP14AQ9BVJ6 771 aaKnown RBP15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 LNPKQ9C0E8 428 aa15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 BCL2L12Q9HB09 334 aa15.76■□□□□ 0.11
HMGB3P4-201ENST00000428776 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 PHF14O94880 888 aa15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 HSP90B1P14625 803 aaKnown RBP15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 PDE4AP27815 886 aa15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 SMIM5Q71RC9 77 aa15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 LRRCC1Q9C099 1032 aa15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 SRP68Q9UHB9 627 aaKnown RBP15.75■□□□□ 0.11
HMGB3P4-201ENST00000428776 SH3TC1Q8TE82 1336 aa15.74■□□□□ 0.11
HMGB3P4-201ENST00000428776 SF3B2Q13435 895 aaKnown RBP15.74■□□□□ 0.11
HMGB3P4-201ENST00000428776 ERC1Q8IUD2 1116 aa15.74■□□□□ 0.11
HMGB3P4-201ENST00000428776 AKT1S1Q96B36 256 aa15.74■□□□□ 0.11
HMGB3P4-201ENST00000428776 COPRSQ9NQ92 184 aa15.74■□□□□ 0.11
HMGB3P4-201ENST00000428776 APBB1O00213 710 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 IRS4O14654 1257 aaPredicted RBP15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 PDE8AO60658 829 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 NTSR2O95665 410 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 CSF1RP07333 972 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 RFX5P48382 616 aaPredicted RBP15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 TBC1D9BQ66K14 1250 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 KIF1BPQ96EK5 621 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 CAMKK2Q96RR4 588 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 SETDB2Q96T68 719 aa15.73■□□□□ 0.11
HMGB3P4-201ENST00000428776 G3BP1Q13283 466 aaKnown RBP eCLIP15.72■□□□□ 0.11
HMGB3P4-201ENST00000428776 SYNE4Q8N205 404 aa15.72■□□□□ 0.11
HMGB3P4-201ENST00000428776 FLAD1Q8NFF5 587 aa15.72■□□□□ 0.11
HMGB3P4-201ENST00000428776 NYXQ9GZU5 481 aa15.72■□□□□ 0.11
HMGB3P4-201ENST00000428776 TFCP2L1Q9NZI6 479 aa15.72■□□□□ 0.11
HMGB3P4-201ENST00000428776 SMARCA5O60264 1052 aaPredicted RBP15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 BAG6P46379 1132 aa15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 PTPN12Q05209 780 aaKnown RBP15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 OS9Q13438 667 aaPredicted RBP15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 ZNF827Q17R98 1081 aa15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 CCDC125Q86Z20 511 aa15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 RHPN1Q8TCX5 695 aa15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 PA2G4Q9UQ80 394 aaKnown RBP15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 CHMP3Q9Y3E7 222 aa15.71■□□□□ 0.11
HMGB3P4-201ENST00000428776 FAM177BA6PVY3 158 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 CTSWP56202 376 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 EN1Q05925 392 aaPredicted RBP15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 EZH2Q15910 746 aaKnown RBP15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 CCDC57Q2TAC2 916 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 BICDL1Q6ZP65 573 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 TTLL11Q8NHH1 800 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 SPEF2Q9C093 1822 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 AK9Q5TCS8 1911 aa15.7■□□□□ 0.1
HMGB3P4-201ENST00000428776 GYS1P13807 737 aa15.69■□□□□ 0.1
HMGB3P4-201ENST00000428776 SLC10A5Q5PT55 438 aa15.69■□□□□ 0.1
HMGB3P4-201ENST00000428776 TPTE2Q6XPS3 522 aa15.69■□□□□ 0.1
HMGB3P4-201ENST00000428776 FBXO3Q9UK99 471 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms