RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 LRRC24Q50LG9 513 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 L1TD1Q5T7N2 865 aaKnown RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 ZNF589Q86UQ0 364 aaPredicted RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 GBP4Q96PP9 640 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 BTG4Q9NY30 223 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 SLAIN2Q9P270 581 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 CIZ1Q9ULV3 898 aaPredicted RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 TBC1D2BQ9UPU7 963 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 VPS37CA5D8V6 355 aaPredicted RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 NEURL1BA8MQ27 555 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 CEBPZQ03701 1054 aaKnown RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 DDX21Q9NR30 783 aaKnown RBP eCLIP10.12□□□□□ -0.79
CD44-208ENST00000428726 N4BP2Q86UW6 1770 aaPredicted RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 C1orf167Q5SNV9 1468 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 SYCE3A1L190 88 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 FIBPO43427 364 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 DDIT3P35638 169 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 AK2P54819 239 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 DDX11Q96FC9 970 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 BCL11BQ9C0K0 894 aaPredicted RBP10.12□□□□□ -0.79
CD44-208ENST00000428726 ERBB4Q15303 1308 aa10.12□□□□□ -0.79
CD44-208ENST00000428726 MED1Q15648 1581 aaPredicted RBP10.11□□□□□ -0.79
CD44-208ENST00000428726 PCNTO95613 3336 aa10.11□□□□□ -0.79
CD44-208ENST00000428726 FKBP4Q02790 459 aaKnown RBP eCLIP10.11□□□□□ -0.79
CD44-208ENST00000428726 GRPEL1Q9HAV7 217 aa10.11□□□□□ -0.79
CD44-208ENST00000428726 MEGF6O75095 1541 aa10.11□□□□□ -0.79
CD44-208ENST00000428726 GCKRQ14397 625 aa10.11□□□□□ -0.79
CD44-208ENST00000428726 CNTROBQ8N137 903 aa10.11□□□□□ -0.79
CD44-208ENST00000428726 ZCRB1Q8TBF4 217 aaKnown RBP10.11□□□□□ -0.79
CD44-208ENST00000428726 TRIM44Q96DX7 344 aaPredicted RBP10.11□□□□□ -0.79
CD44-208ENST00000428726 SNX14Q9Y5W7 946 aa10.11□□□□□ -0.79
CD44-208ENST00000428726 DDX58O95786 925 aaKnown RBP10.1□□□□□ -0.79
CD44-208ENST00000428726 DNAJC10Q8IXB1 793 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 LMO7Q8WWI1 1683 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 SLIT3O75094 1523 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 GOLIM4O00461 696 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 HAND2P61296 217 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 CADPS2Q86UW7 1296 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 LINS1Q8NG48 757 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 FBXW7Q969H0 707 aa10.1□□□□□ -0.79
CD44-208ENST00000428726 IQSEC3Q9UPP2 1182 aaPredicted RBP10.1□□□□□ -0.79
CD44-208ENST00000428726 SALL3Q9BXA9 1300 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 SNRPA1P09661 255 aaKnown RBP10.09□□□□□ -0.79
CD44-208ENST00000428726 MCCP23508 829 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 ECHDC1Q9NTX5 307 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 HYPKQ9NX55 129 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 KDM3BQ7LBC6 1761 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 VPS53Q5VIR6 699 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 GPT2Q8TD30 523 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 DBNLQ9UJU6 430 aaKnown RBP10.09□□□□□ -0.79
CD44-208ENST00000428726 NCAPD2Q15021 1401 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 DDX11L8A8MPP1 907 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 GUCY1B3Q02153 619 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 POLA2Q14181 598 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 FMNL2Q96PY5 1086 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 TFIP11Q9UBB9 837 aaKnown RBP10.09□□□□□ -0.79
CD44-208ENST00000428726 CNPY2Q9Y2B0 182 aa10.09□□□□□ -0.79
CD44-208ENST00000428726 SGSM2O43147 1006 aa10.08□□□□□ -0.8
CD44-208ENST00000428726 PRIM1P49642 420 aaKnown RBP10.08□□□□□ -0.8
CD44-208ENST00000428726 FGD1P98174 961 aa10.08□□□□□ -0.8
CD44-208ENST00000428726 KDM6AO15550 1401 aaPredicted RBP10.08□□□□□ -0.8
CD44-208ENST00000428726 GOLGA6L22H0YM25 854 aa10.08□□□□□ -0.8
CD44-208ENST00000428726 BICDL1Q6ZP65 573 aa10.08□□□□□ -0.8
CD44-208ENST00000428726 RUFY3Q7L099 469 aa10.08□□□□□ -0.8
CD44-208ENST00000428726 RBM8AQ9Y5S9 174 aaKnown RBP10.08□□□□□ -0.8
CD44-208ENST00000428726 WTIPA6NIX2 430 aaPredicted RBP10.07□□□□□ -0.8
CD44-208ENST00000428726 HLFQ16534 295 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 TTLL5Q6EMB2 1281 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 GPHNQ9NQX3 736 aaPredicted RBP10.07□□□□□ -0.8
CD44-208ENST00000428726 OVOS2A0A0G2JMS6 1433 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 KIF1AQ12756 1690 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 A0A087WWV3 80 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 ADORA1P30542 326 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 GORABQ5T7V8 394 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 TMEM63CQ9P1W3 806 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 TRPM3Q9HCF6 1732 aaPredicted RBP10.07□□□□□ -0.8
CD44-208ENST00000428726 RAB11FIP3O75154 756 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 CCT2P78371 535 aaKnown RBP10.07□□□□□ -0.8
CD44-208ENST00000428726 TAF7LQ5H9L4 462 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 METTL22Q9BUU2 404 aaPredicted RBP10.07□□□□□ -0.8
CD44-208ENST00000428726 LSG1Q9H089 658 aaKnown RBP10.07□□□□□ -0.8
CD44-208ENST00000428726 LMBRD1Q9NUN5 540 aa10.07□□□□□ -0.8
CD44-208ENST00000428726 RGPD5Q99666 1765 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 KDM4FA0A1W2PPD8 638 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 GLRX3O76003 335 aaKnown RBP10.06□□□□□ -0.8
CD44-208ENST00000428726 HSP90B1P14625 803 aaKnown RBP10.06□□□□□ -0.8
CD44-208ENST00000428726 PTPN12Q05209 780 aaKnown RBP10.06□□□□□ -0.8
CD44-208ENST00000428726 SLC4A8Q2Y0W8 1093 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 DCAF5Q96JK2 942 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 STAP2Q9UGK3 403 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 SPATA31A3Q5VYP0 1347 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 PTMSP20962 102 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 RBM10P98175 930 aaKnown RBP10.06□□□□□ -0.8
CD44-208ENST00000428726 CAMK4Q16566 473 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 VSIG10Q8N0Z9 540 aa10.06□□□□□ -0.8
CD44-208ENST00000428726 AOX1Q06278 1338 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 MST1RQ04912 1400 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 INCENPQ9NQS7 918 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 PDRG1Q9NUG6 133 aa10.05□□□□□ -0.8
CD44-208ENST00000428726 JAG2Q9Y219 1238 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms