RNA–Protein interactions for RNA: ENST00000425280.1

LDB1-202, Transcript of LIM domain binding 1, humanhuman

TSL 5 BASIC

Gene LDB1, Length 2,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-202ENST00000425280 GIGYF2Q6Y7W6 1299 aaKnown RBP32.49■■■□□ 2.79
LDB1-202ENST00000425280 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP32.49■■■□□ 2.79
LDB1-202ENST00000425280 PALLDQ8WX93 1383 aa32.49■■■□□ 2.79
LDB1-202ENST00000425280 TRIM6-TRIM34B2RNG4 842 aa32.49■■■□□ 2.79
LDB1-202ENST00000425280 ATP6V1AP38606 617 aa32.49■■■□□ 2.79
LDB1-202ENST00000425280 CICQ96RK0 1608 aaPredicted RBP32.48■■■□□ 2.79
LDB1-202ENST00000425280 ANP32EQ9BTT0 268 aa32.48■■■□□ 2.79
LDB1-202ENST00000425280 TTC41PQ6P2S7 1318 aa32.48■■■□□ 2.79
LDB1-202ENST00000425280 HLFQ16534 295 aa32.47■■■□□ 2.79
LDB1-202ENST00000425280 RILPL2Q969X0 211 aa32.47■■■□□ 2.79
LDB1-202ENST00000425280 THSD7AQ9UPZ6 1657 aa32.47■■■□□ 2.79
LDB1-202ENST00000425280 MEX3CQ5U5Q3 659 aaKnown RBP32.47■■■□□ 2.79
LDB1-202ENST00000425280 AACSQ86V21 672 aa32.46■■■□□ 2.79
LDB1-202ENST00000425280 SMARCC1Q92922 1105 aaPredicted RBP32.46■■■□□ 2.79
LDB1-202ENST00000425280 IFIT2P09913 472 aaKnown RBP32.46■■■□□ 2.79
LDB1-202ENST00000425280 MYT1Q01538 1121 aa32.46■■■□□ 2.79
LDB1-202ENST00000425280 INTS5Q6P9B9 1019 aaKnown RBP32.46■■■□□ 2.79
LDB1-202ENST00000425280 ITPK1Q13572 414 aa32.45■■■□□ 2.79
LDB1-202ENST00000425280 CCDC87Q9NVE4 849 aa32.45■■■□□ 2.79
LDB1-202ENST00000425280 EAF2Q96CJ1 260 aaPredicted RBP32.44■■■□□ 2.78
LDB1-202ENST00000425280 RREB1Q92766 1687 aa32.44■■■□□ 2.78
LDB1-202ENST00000425280 ANKRD36CQ5JPF3 1778 aa32.43■■■□□ 2.78
LDB1-202ENST00000425280 CRKLP46109 303 aaKnown RBP32.43■■■□□ 2.78
LDB1-202ENST00000425280 USP26Q9BXU7 913 aa32.43■■■□□ 2.78
LDB1-202ENST00000425280 HSP90AB3PQ58FF7 597 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 DZIP3Q86Y13 1208 aaKnown RBP32.42■■■□□ 2.78
LDB1-202ENST00000425280 KIF2CQ99661 725 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 TBC1D2Q9BYX2 928 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 ECHDC1Q9NTX5 307 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 ERC2O15083 957 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 GLRX3O76003 335 aaKnown RBP32.42■■■□□ 2.78
LDB1-202ENST00000425280 PCCAP05165 728 aaPredicted RBP32.42■■■□□ 2.78
LDB1-202ENST00000425280 CHMLP26374 656 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 EIF5P55010 431 aaKnown RBP32.42■■■□□ 2.78
LDB1-202ENST00000425280 CHMP3Q9Y3E7 222 aa32.42■■■□□ 2.78
LDB1-202ENST00000425280 ERVV-1B6SEH8 477 aa32.41■■■□□ 2.78
LDB1-202ENST00000425280 GPATCH3Q96I76 525 aa32.41■■■□□ 2.78
LDB1-202ENST00000425280 NUP98P52948 1817 aa32.41■■■□□ 2.78
LDB1-202ENST00000425280 MAP4K4O95819 1239 aaPredicted RBP32.41■■■□□ 2.78
LDB1-202ENST00000425280 TBC1D2BQ9UPU7 963 aa32.41■■■□□ 2.78
LDB1-202ENST00000425280 AK9Q5TCS8 1911 aa32.4■■■□□ 2.78
LDB1-202ENST00000425280 AFF2P51816 1311 aa32.4■■■□□ 2.78
LDB1-202ENST00000425280 REC8O95072 547 aa32.39■■■□□ 2.78
LDB1-202ENST00000425280 NLRP10Q86W26 655 aa32.39■■■□□ 2.78
LDB1-202ENST00000425280 ZBTB38Q8NAP3 1195 aaPredicted RBP32.39■■■□□ 2.78
LDB1-202ENST00000425280 GPTP24298 496 aa32.39■■■□□ 2.78
LDB1-202ENST00000425280 ESYT1Q9BSJ8 1104 aa32.39■■■□□ 2.78
LDB1-202ENST00000425280 CCDC8Q9H0W5 538 aaPredicted RBP32.39■■■□□ 2.78
LDB1-202ENST00000425280 FAM89AQ96GI7 184 aa32.38■■■□□ 2.77
LDB1-202ENST00000425280 GJD4Q96KN9 370 aaPredicted RBP32.38■■■□□ 2.77
LDB1-202ENST00000425280 MYH14Q7Z406 1995 aaKnown RBP32.38■■■□□ 2.77
LDB1-202ENST00000425280 ZNF831Q5JPB2 1677 aa32.37■■■□□ 2.77
LDB1-202ENST00000425280 TLR7Q9NYK1 1049 aaKnown RBP32.37■■■□□ 2.77
LDB1-202ENST00000425280 TFCP2Q12800 502 aa32.36■■■□□ 2.77
LDB1-202ENST00000425280 CNTROBQ8N137 903 aa32.36■■■□□ 2.77
LDB1-202ENST00000425280 PLA2G12BQ9BX93 195 aa32.36■■■□□ 2.77
LDB1-202ENST00000425280 COL5A3P25940 1745 aaPredicted RBP32.36■■■□□ 2.77
LDB1-202ENST00000425280 PTF1AQ7RTS3 328 aa32.35■■■□□ 2.77
LDB1-202ENST00000425280 CDHR2Q9BYE9 1310 aa32.34■■■□□ 2.77
LDB1-202ENST00000425280 TNNI3KQ59H18 835 aa32.33■■■□□ 2.77
LDB1-202ENST00000425280 FPGT-TNNI3KV9GXZ4 949 aa32.33■■■□□ 2.77
LDB1-202ENST00000425280 ATRNO75882 1429 aa32.33■■■□□ 2.77
LDB1-202ENST00000425280 ATG9AQ7Z3C6 839 aa32.33■■■□□ 2.77
LDB1-202ENST00000425280 ZNF34Q8IZ26 560 aa32.32■■■□□ 2.76
LDB1-202ENST00000425280 SYNE4Q8N205 404 aa32.32■■■□□ 2.76
LDB1-202ENST00000425280 NHSQ6T4R5 1651 aa32.31■■■□□ 2.76
LDB1-202ENST00000425280 SNX21Q969T3 373 aa32.3■■■□□ 2.76
LDB1-202ENST00000425280 ZNF594Q96JF6 807 aaPredicted RBP32.3■■■□□ 2.76
LDB1-202ENST00000425280 UBN2Q6ZU65 1347 aa32.3■■■□□ 2.76
LDB1-202ENST00000425280 CSF1RP07333 972 aa32.3■■■□□ 2.76
LDB1-202ENST00000425280 BTAF1O14981 1849 aa32.29■■■□□ 2.76
LDB1-202ENST00000425280 FAM182BQ5T319 152 aa32.29■■■□□ 2.76
LDB1-202ENST00000425280 LINC00116Q8NCU8 138 aa32.29■■■□□ 2.76
LDB1-202ENST00000425280 TRPC5Q9UL62 973 aaPredicted RBP32.29■■■□□ 2.76
LDB1-202ENST00000425280 EYA2O00167 538 aa32.28■■■□□ 2.76
LDB1-202ENST00000425280 CAMTA2O94983 1202 aa32.28■■■□□ 2.76
LDB1-202ENST00000425280 ONECUT3O60422 494 aaPredicted RBP32.28■■■□□ 2.76
LDB1-202ENST00000425280 IL15P40933 162 aaPredicted RBP32.28■■■□□ 2.76
LDB1-202ENST00000425280 TRMT112Q9UI30 125 aaKnown RBP32.28■■■□□ 2.76
LDB1-202ENST00000425280 DBNLQ9UJU6 430 aaKnown RBP32.28■■■□□ 2.76
LDB1-202ENST00000425280 CCDC57Q2TAC2 916 aa32.27■■■□□ 2.76
LDB1-202ENST00000425280 HSCBQ8IWL3 235 aa32.27■■■□□ 2.76
LDB1-202ENST00000425280 CIAO1O76071 339 aa32.27■■■□□ 2.76
LDB1-202ENST00000425280 LRRC24Q50LG9 513 aa32.27■■■□□ 2.76
LDB1-202ENST00000425280 EVI5LQ96CN4 794 aa32.26■■■□□ 2.75
LDB1-202ENST00000425280 IL25Q9H293 177 aa32.26■■■□□ 2.75
LDB1-202ENST00000425280 IRS4O14654 1257 aaPredicted RBP32.25■■■□□ 2.75
LDB1-202ENST00000425280 KCNQ4P56696 695 aa32.24■■■□□ 2.75
LDB1-202ENST00000425280 CCDC85AQ96PX6 553 aaPredicted RBP32.24■■■□□ 2.75
LDB1-202ENST00000425280 PUS3Q9BZE2 481 aaKnown RBP32.24■■■□□ 2.75
LDB1-202ENST00000425280 BOLA2Q9H3K6 86 aa32.23■■■□□ 2.75
LDB1-202ENST00000425280 GPR108Q9NPR9 543 aa32.23■■■□□ 2.75
LDB1-202ENST00000425280 ANO2Q9NQ90 1003 aa32.23■■■□□ 2.75
LDB1-202ENST00000425280 MYH3P11055 1940 aa32.23■■■□□ 2.75
LDB1-202ENST00000425280 TTLL11Q8NHH1 800 aa32.23■■■□□ 2.75
LDB1-202ENST00000425280 CTSWP56202 376 aa32.22■■■□□ 2.75
LDB1-202ENST00000425280 RABEP1Q15276 862 aa32.22■■■□□ 2.75
LDB1-202ENST00000425280 DBNDD2Q9BQY9 259 aa32.22■■■□□ 2.75
LDB1-202ENST00000425280 SGSM2O43147 1006 aa32.22■■■□□ 2.75
LDB1-202ENST00000425280 ATP5JP18859 108 aa32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms