RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 SH3TC1Q8TE82 1336 aa8.21□□□□□ -1.1
USP54-202ENST00000413442 CT47B1P0C2W7 299 aaPredicted RBP8.2□□□□□ -1.1
USP54-202ENST00000413442 PIP4K2AP48426 406 aaPredicted RBP8.2□□□□□ -1.1
USP54-202ENST00000413442 NEXNQ0ZGT2 675 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 AIMP1Q12904 312 aaKnown RBP8.2□□□□□ -1.1
USP54-202ENST00000413442 SUSD4Q5VX71 490 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 KSR2Q6VAB6 950 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 NLRP10Q86W26 655 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 C8orf58Q8NAV2 365 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 RPGRQ92834 1020 aaKnown RBP8.2□□□□□ -1.1
USP54-202ENST00000413442 ISCA1Q9BUE6 129 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 GPBP1L1Q9HC44 474 aaPredicted RBP8.2□□□□□ -1.1
USP54-202ENST00000413442 ADCY9O60503 1353 aa8.2□□□□□ -1.1
USP54-202ENST00000413442 DICER1Q9UPY3 1922 aaKnown RBP8.19□□□□□ -1.1
USP54-202ENST00000413442 E9PSI1 815 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 VAMP4O75379 141 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 NTSR2O95665 410 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 SLC4A2P04920 1241 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 SF3B3Q15393 1217 aaKnown RBP8.19□□□□□ -1.1
USP54-202ENST00000413442 CCDC93Q567U6 631 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 SUPT20HQ8NEM7 779 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 C7orf43Q8WVR3 580 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 PSMD1Q99460 953 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 METTL22Q9BUU2 404 aaPredicted RBP8.19□□□□□ -1.1
USP54-202ENST00000413442 TRMT112Q9UI30 125 aaKnown RBP8.19□□□□□ -1.1
USP54-202ENST00000413442 FER1L6Q2WGJ9 1857 aa8.19□□□□□ -1.1
USP54-202ENST00000413442 CCDC88AQ3V6T2 1871 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 ELL2O00472 640 aaPredicted RBP8.18□□□□□ -1.1
USP54-202ENST00000413442 PROSER3Q2NL68 480 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 ERFEQ4G0M1 354 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 C9orf131Q5VYM1 1079 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 PRPF40BQ6NWY9 871 aaKnown RBP8.18□□□□□ -1.1
USP54-202ENST00000413442 DDX46Q7L014 1031 aaKnown RBP8.18□□□□□ -1.1
USP54-202ENST00000413442 ZBTB38Q8NAP3 1195 aaPredicted RBP8.18□□□□□ -1.1
USP54-202ENST00000413442 TAOK3Q9H2K8 898 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 UBN2Q6ZU65 1347 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 ZNF521Q96K83 1311 aa8.18□□□□□ -1.1
USP54-202ENST00000413442 SLX4Q8IY92 1834 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 GLTPD2A6NH11 291 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 C21orf2O43822 256 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 PCCAP05165 728 aaPredicted RBP8.17□□□□□ -1.1
USP54-202ENST00000413442 GPTP24298 496 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 FKBP4Q02790 459 aaKnown RBP eCLIP8.17□□□□□ -1.1
USP54-202ENST00000413442 KRT24Q2M2I5 525 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 SP8Q8IXZ3 490 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 NECTIN2Q92692 538 aa8.17□□□□□ -1.1
USP54-202ENST00000413442 CWC25Q9NXE8 425 aaPredicted RBP8.17□□□□□ -1.1
USP54-202ENST00000413442 PDE8AO60658 829 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 TOMM70O94826 608 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 VEGFAP15692 232 aaPredicted RBP8.16□□□□□ -1.1
USP54-202ENST00000413442 ALDH1L2Q3SY69 923 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 DIEXFQ68CQ4 756 aaKnown RBP8.16□□□□□ -1.1
USP54-202ENST00000413442 TSPYL6Q8N831 410 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 LINS1Q8NG48 757 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 CDHR2Q9BYE9 1310 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 PHAXQ9H814 394 aaKnown RBP8.16□□□□□ -1.1
USP54-202ENST00000413442 FANCIQ9NVI1 1328 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 RNF181Q9P0P0 153 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 HDAC5Q9UQL6 1122 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 ATP6V0A2Q9Y487 856 aa8.16□□□□□ -1.1
USP54-202ENST00000413442 PI4KAP2A4QPH2 592 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 FAM177BA6PVY3 158 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 ANXA1P04083 346 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 C1QTNF8P60827 252 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 EXOSC9Q06265 439 aaKnown RBP8.15□□□□□ -1.1
USP54-202ENST00000413442 SLFN5Q08AF3 891 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 NUTM1Q86Y26 1132 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 TRMT2AQ8IZ69 625 aaKnown RBP8.15□□□□□ -1.1
USP54-202ENST00000413442 PI4KAP1Q8N8J0 262 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 JDP2Q8WYK2 163 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 TSR2Q969E8 191 aaKnown RBP8.15□□□□□ -1.1
USP54-202ENST00000413442 RTFDC1Q9BY42 306 aaPredicted RBP8.15□□□□□ -1.1
USP54-202ENST00000413442 MAP3K2Q9Y2U5 619 aa8.15□□□□□ -1.1
USP54-202ENST00000413442 PTPRCP08575 1304 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 IQCA1LA6NCM1 817 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 H7C1W4 665 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 NFKBIEO00221 500 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 IRS4O14654 1257 aaPredicted RBP8.14□□□□□ -1.11
USP54-202ENST00000413442 BRPF1P55201 1214 aaPredicted RBP8.14□□□□□ -1.11
USP54-202ENST00000413442 FSTL1Q12841 308 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 FLIIQ13045 1269 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 GRAPQ13588 217 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 CCDC152Q4G0S7 254 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 C16orf71Q8IYS4 520 aaPredicted RBP8.14□□□□□ -1.11
USP54-202ENST00000413442 GRAPLQ8TC17 118 aaPredicted RBP8.14□□□□□ -1.11
USP54-202ENST00000413442 DNAAF4Q8WXU2 420 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 FAM89AQ96GI7 184 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 PLA2G12BQ9BX93 195 aa8.14□□□□□ -1.11
USP54-202ENST00000413442 COL11A2P13942 1736 aaPredicted RBP8.14□□□□□ -1.11
USP54-202ENST00000413442 PPEF1O14829 653 aaPredicted RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 ALDH1L1O75891 902 aa8.13□□□□□ -1.11
USP54-202ENST00000413442 IARSP41252 1262 aaKnown RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 MMP14P50281 582 aa8.13□□□□□ -1.11
USP54-202ENST00000413442 RPS8P62241 208 aaKnown RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 FKBP5Q13451 457 aaPredicted RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 SYNE4Q8N205 404 aa8.13□□□□□ -1.11
USP54-202ENST00000413442 CCDC24Q8N4L8 307 aa8.13□□□□□ -1.11
USP54-202ENST00000413442 MPNDQ8N594 471 aa8.13□□□□□ -1.11
USP54-202ENST00000413442 RBM46Q8TBY0 533 aaKnown RBP8.13□□□□□ -1.11
USP54-202ENST00000413442 MYD88Q99836 296 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms