RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 HDGFL1Q5TGJ6 251 aa6.58□□□□□ -1.36
VPS41-203ENST00000395969 CARMIL3Q8ND23 1372 aa6.58□□□□□ -1.36
VPS41-203ENST00000395969 ERVV-1B6SEH8 477 aa6.58□□□□□ -1.36
VPS41-203ENST00000395969 DDX58O95786 925 aaKnown RBP6.58□□□□□ -1.36
VPS41-203ENST00000395969 TEFQ10587 303 aa6.58□□□□□ -1.36
VPS41-203ENST00000395969 LARP1Q6PKG0 1096 aaKnown RBP6.58□□□□□ -1.36
VPS41-203ENST00000395969 ERC1Q8IUD2 1116 aa6.58□□□□□ -1.36
VPS41-203ENST00000395969 H7C1W4 665 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 CIAO1O76071 339 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 VPS72Q15906 364 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 MAP7D2Q96T17 732 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 RNF39Q9H2S5 420 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 COPRSQ9NQ92 184 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 CHMP5Q9NZZ3 219 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 ANAPC15P60006 121 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 KIAA1211Q6ZU35 1233 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.57□□□□□ -1.36
VPS41-203ENST00000395969 ZNF512BQ96KM6 892 aaPredicted RBP6.57□□□□□ -1.36
VPS41-203ENST00000395969 ISCA1Q9BUE6 129 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 AKAP11Q9UKA4 1901 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 MYH14Q7Z406 1995 aaKnown RBP6.57□□□□□ -1.36
VPS41-203ENST00000395969 DDX11L8A8MPP1 907 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 VGLL3A8MV65 326 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 OFD1O75665 1012 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 RFX5P48382 616 aaPredicted RBP6.57□□□□□ -1.36
VPS41-203ENST00000395969 TMED8Q6PL24 325 aaPredicted RBP6.57□□□□□ -1.36
VPS41-203ENST00000395969 MEIS3Q99687 375 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 ALDH8A1Q9H2A2 487 aaPredicted RBP6.57□□□□□ -1.36
VPS41-203ENST00000395969 GPBP1L1Q9HC44 474 aaPredicted RBP6.57□□□□□ -1.36
VPS41-203ENST00000395969 FAM13BQ9NYF5 915 aa6.57□□□□□ -1.36
VPS41-203ENST00000395969 ZNF646O15015 1829 aaPredicted RBP6.56□□□□□ -1.36
VPS41-203ENST00000395969 DLEC1Q9Y238 1755 aa6.56□□□□□ -1.36
VPS41-203ENST00000395969 KRT24Q2M2I5 525 aa6.56□□□□□ -1.36
VPS41-203ENST00000395969 SMAP1Q8IYB5 467 aaPredicted RBP6.56□□□□□ -1.36
VPS41-203ENST00000395969 KAZALD1Q96I82 304 aa6.56□□□□□ -1.36
VPS41-203ENST00000395969 PPP1R9BQ96SB3 815 aa6.56□□□□□ -1.36
VPS41-203ENST00000395969 BCL2L13Q9BXK5 485 aa6.56□□□□□ -1.36
VPS41-203ENST00000395969 CHPF2Q9P2E5 772 aa6.56□□□□□ -1.36
VPS41-203ENST00000395969 NEURL1BA8MQ27 555 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 C1QBPQ07021 282 aaKnown RBP6.55□□□□□ -1.36
VPS41-203ENST00000395969 RAD50Q92878 1312 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 TRIM44Q96DX7 344 aaPredicted RBP6.55□□□□□ -1.36
VPS41-203ENST00000395969 KIF2CQ99661 725 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 BRWD3Q6RI45 1802 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 CDC45O75419 566 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 IGKV5-2P06315 115 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 GSPT1P15170 499 aaKnown RBP6.55□□□□□ -1.36
VPS41-203ENST00000395969 CCDC191Q8NCU4 936 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 UPF2Q9HAU5 1272 aaKnown RBP6.55□□□□□ -1.36
VPS41-203ENST00000395969 CNTNAP4Q9C0A0 1308 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 NUTM2GQ5VZR2 741 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 GAS2L3Q86XJ1 694 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 PRDM11Q9NQV5 511 aa6.55□□□□□ -1.36
VPS41-203ENST00000395969 ZNF609O15014 1411 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 PALLDQ8WX93 1383 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 GRM8O00222 908 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 KCNQ3O43525 872 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 TOM1O60784 492 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 CSF1RP07333 972 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 CCDC173Q0VFZ6 552 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 GCKRQ14397 625 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 TSGA10IPQ3SY00 556 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 RC3H1Q5TC82 1133 aaKnown RBP6.54□□□□□ -1.36
VPS41-203ENST00000395969 MPRIPQ6WCQ1 1025 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 ZSCAN30Q86W11 494 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 CCDC82Q8N4S0 544 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 USHBP1Q8N6Y0 703 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 PI4K2BQ8TCG2 481 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 KIF1BPQ96EK5 621 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 ZNF496Q96IT1 587 aaPredicted RBP6.54□□□□□ -1.36
VPS41-203ENST00000395969 CIZ1Q9ULV3 898 aaPredicted RBP6.54□□□□□ -1.36
VPS41-203ENST00000395969 PDE1AP54750 535 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.54□□□□□ -1.36
VPS41-203ENST00000395969 NAP1L2Q9ULW6 460 aaPredicted RBP6.54□□□□□ -1.36
VPS41-203ENST00000395969 TNRC6CQ9HCJ0 1690 aaKnown RBP6.54□□□□□ -1.36
VPS41-203ENST00000395969 MYH15Q9Y2K3 1946 aa6.54□□□□□ -1.36
VPS41-203ENST00000395969 SPDYE4A6NLX3 237 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 FBXL16Q8N461 479 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 LRRCC1Q9C099 1032 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 KIF13BQ9NQT8 1826 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 NBPF26B4DH59 902 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 UBTFL1P0CB47 393 aaPredicted RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 IL6STP40189 918 aaPredicted RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 NBPF14Q5TI25 921 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 NBPF10Q6P3W6 841 aaKnown RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 NBPF15Q8N660 670 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 FOCADQ5VW36 1801 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 DDX60LQ5H9U9 1706 aaKnown RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 ZC3H6P61129 1189 aaKnown RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 FOXO4P98177 505 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 MTERF4Q7Z6M4 381 aaKnown RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 NFATC2IPQ8NCF5 419 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 RBM33Q96EV2 1170 aaKnown RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 PHAXQ9H814 394 aaKnown RBP6.53□□□□□ -1.36
VPS41-203ENST00000395969 NLRP2Q9NX02 1062 aa6.53□□□□□ -1.36
VPS41-203ENST00000395969 PDS5AQ29RF7 1337 aaKnown RBP6.52□□□□□ -1.37
VPS41-203ENST00000395969 HMGB1P09429 215 aaKnown RBP6.52□□□□□ -1.37
VPS41-203ENST00000395969 CABP4P57796 275 aa6.52□□□□□ -1.37
VPS41-203ENST00000395969 MKRN3Q13064 507 aaKnown RBP6.52□□□□□ -1.37
VPS41-203ENST00000395969 FKBP5Q13451 457 aaPredicted RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms