RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 ZC3H13Q5T200 1668 aaKnown RBP6.48□□□□□ -1.37
ATG4A-204ENST00000372246 ABCC3O15438 1527 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 VWDEQ8N2E2 1590 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 F13A1P00488 732 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 CDC37L1Q7L3B6 337 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 TTC6Q86TZ1 520 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 CERS3Q8IU89 383 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 ANKRD7Q92527 254 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 FTOQ9C0B1 505 aaKnown RBP eCLIP6.48□□□□□ -1.37
ATG4A-204ENST00000372246 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.48□□□□□ -1.37
ATG4A-204ENST00000372246 WDR33Q9C0J8 1336 aaKnown RBP6.48□□□□□ -1.37
ATG4A-204ENST00000372246 NSD2O96028 1365 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 KIAA1210Q9ULL0 1709 aa6.48□□□□□ -1.37
ATG4A-204ENST00000372246 INO80Q9ULG1 1556 aaPredicted RBP6.47□□□□□ -1.37
ATG4A-204ENST00000372246 TNNT1P13805 278 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 KCNJ4P48050 445 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 EIF4A2Q14240 407 aaKnown RBP6.47□□□□□ -1.37
ATG4A-204ENST00000372246 ANO6Q4KMQ2 910 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 TXNDC2Q86VQ3 553 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 CACTINQ8WUQ7 758 aaKnown RBP6.47□□□□□ -1.37
ATG4A-204ENST00000372246 PHAXQ9H814 394 aaKnown RBP6.47□□□□□ -1.37
ATG4A-204ENST00000372246 SMC3Q9UQE7 1217 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 MRVI1Q9Y6F6 885 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 SALL3Q9BXA9 1300 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 ADGRB3O60242 1522 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 EFCAB6Q5THR3 1501 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 UBE2HP62256 183 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 PRPF40BQ6NWY9 871 aaKnown RBP6.47□□□□□ -1.37
ATG4A-204ENST00000372246 DNAJC25Q9H1X3 360 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 CBX8Q9HC52 389 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 DACT1Q9NYF0 836 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 CTNNA3Q9UI47 895 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 USP16Q9Y5T5 823 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 NDUFB9Q9Y6M9 179 aa6.47□□□□□ -1.37
ATG4A-204ENST00000372246 IFT172Q9UG01 1749 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 SURF6O75683 361 aaKnown RBP6.46□□□□□ -1.37
ATG4A-204ENST00000372246 SLFN14P0C7P3 912 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 ME3Q16798 604 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 KMT5BQ4FZB7 885 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 JAKMIP1Q96N16 626 aaKnown RBP6.46□□□□□ -1.37
ATG4A-204ENST00000372246 TRIM5Q9C035 493 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 TSPYL4Q9UJ04 414 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 MTMR6Q9Y217 621 aa6.46□□□□□ -1.37
ATG4A-204ENST00000372246 CHL1O00533 1208 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 PHF14O94880 888 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 IFIT2P09913 472 aaKnown RBP6.46□□□□□ -1.38
ATG4A-204ENST00000372246 CDK11BP21127 795 aaKnown RBP6.46□□□□□ -1.38
ATG4A-204ENST00000372246 MCCP23508 829 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 HSPA4P34932 840 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 TYRO3Q06418 890 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 ELF2Q15723 593 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 TPD52L1Q16890 204 aaPredicted RBP6.46□□□□□ -1.38
ATG4A-204ENST00000372246 NUTM2GQ5VZR2 741 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 ZSCAN25Q6NSZ9 544 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 TTC14Q96N46 770 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 GTPBP4Q9BZE4 634 aaKnown RBP6.46□□□□□ -1.38
ATG4A-204ENST00000372246 ZNF215Q9UL58 517 aaPredicted RBP6.46□□□□□ -1.38
ATG4A-204ENST00000372246 DEPDC5O75140 1603 aa6.46□□□□□ -1.38
ATG4A-204ENST00000372246 SOS1Q07889 1333 aaPredicted RBP6.46□□□□□ -1.38
ATG4A-204ENST00000372246 NR1I2O75469 434 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 GNAI2P04899 355 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 CHAF1AQ13111 956 aaPredicted RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 MTHFSDQ2M296 383 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 FILIP1Q7Z7B0 1213 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 GTF3C6Q969F1 213 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 INTS4Q96HW7 963 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 EPC1Q9H2F5 836 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 TMX1Q9H3N1 280 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 PA2G4Q9UQ80 394 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 CCDC9Q9Y3X0 531 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 ARHGEF28Q8N1W1 1705 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 PSDA5PKW4 1024 aaPredicted RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 CTIFO43310 598 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 LETM1O95202 739 aaPredicted RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 NBPF7P0C2Y1 421 aaPredicted RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 EIF2S2P20042 333 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 MMRN1Q13201 1228 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 EDC3Q96F86 508 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 LRRC2Q9BYS8 371 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 LSG1Q9H089 658 aaKnown RBP6.45□□□□□ -1.38
ATG4A-204ENST00000372246 TPCN1Q9ULQ1 816 aa6.45□□□□□ -1.38
ATG4A-204ENST00000372246 JAK2O60674 1132 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 HMMRO75330 724 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 GORABQ5T7V8 394 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 FBXO38Q6PIJ6 1188 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 C11orf57Q6ZUT1 292 aaPredicted RBP6.44□□□□□ -1.38
ATG4A-204ENST00000372246 PPP1R42Q7Z4L9 355 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 LTV1Q96GA3 475 aaPredicted RBP6.44□□□□□ -1.38
ATG4A-204ENST00000372246 COG3Q96JB2 828 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 FAM227BQ96M60 508 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 USP44Q9H0E7 712 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 OSBPL3Q9H4L5 887 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 HYPKQ9NX55 129 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 AXIN2Q9Y2T1 843 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 POGZQ7Z3K3 1410 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 PTPRMP28827 1452 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 USP32Q8NFA0 1604 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 PPLO60437 1756 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 EVI5O60447 810 aa6.44□□□□□ -1.38
ATG4A-204ENST00000372246 FLIIQ13045 1269 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms