RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 KIAA1328Q86T90 577 aa11.37□□□□□ -0.59
COL4A6-202ENST00000372216 BIN2Q9UBW5 565 aaPredicted RBP11.37□□□□□ -0.59
COL4A6-202ENST00000372216 TRPM2O94759 1503 aa11.37□□□□□ -0.59
COL4A6-202ENST00000372216 UQCRFS1P1P0C7P4 283 aa11.37□□□□□ -0.59
COL4A6-202ENST00000372216 FERMT2Q96AC1 680 aa11.37□□□□□ -0.59
COL4A6-202ENST00000372216 C8orf76Q96K31 380 aa11.37□□□□□ -0.59
COL4A6-202ENST00000372216 EIF5P55010 431 aaKnown RBP11.36□□□□□ -0.59
COL4A6-202ENST00000372216 PDE4BQ07343 736 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 PLS1Q14651 629 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 KLHL10Q6JEL2 608 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 UHRF1BP1Q6BDS2 1440 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 FERMT3Q86UX7 667 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 RAB11FIP4Q86YS3 637 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 TFCP2L1Q9NZI6 479 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 DZIP3Q86Y13 1208 aaKnown RBP11.36□□□□□ -0.59
COL4A6-202ENST00000372216 ERCC4Q92889 916 aaPredicted RBP11.36□□□□□ -0.59
COL4A6-202ENST00000372216 ZMYND15Q9H091 742 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 KAT14Q9H8E8 782 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 PARP3Q9Y6F1 533 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 KCNA6P17658 529 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 CCT2P78371 535 aaKnown RBP11.36□□□□□ -0.59
COL4A6-202ENST00000372216 MTHFSDQ2M296 383 aaKnown RBP11.36□□□□□ -0.59
COL4A6-202ENST00000372216 TSHZ3Q63HK5 1081 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 CRNKL1Q9BZJ0 848 aaKnown RBP11.36□□□□□ -0.59
COL4A6-202ENST00000372216 NYXQ9GZU5 481 aa11.36□□□□□ -0.59
COL4A6-202ENST00000372216 TSPY2A6NKD2 308 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 LARP6Q9BRS8 491 aaKnown RBP11.35□□□□□ -0.59
COL4A6-202ENST00000372216 FLT4P35916 1363 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 TMEM67Q5HYA8 995 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 DPH6Q7L8W6 267 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 NLRP3Q96P20 1036 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 HAND2P61296 217 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 TXLNBQ8N3L3 684 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 CFAP43Q8NDM7 1665 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 TMEM266Q2M3C6 531 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 MFSD6Q6ZSS7 791 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 NFATC2IPQ8NCF5 419 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 SH2B1Q9NRF2 756 aaPredicted RBP11.35□□□□□ -0.59
COL4A6-202ENST00000372216 BTG4Q9NY30 223 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 RTCBQ9Y3I0 505 aaKnown RBP11.35□□□□□ -0.59
COL4A6-202ENST00000372216 KIF20AO95235 890 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 USP8P40818 1118 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.35□□□□□ -0.59
COL4A6-202ENST00000372216 PHAXQ9H814 394 aaKnown RBP11.35□□□□□ -0.59
COL4A6-202ENST00000372216 HDAC9Q9UKV0 1011 aa11.35□□□□□ -0.59
COL4A6-202ENST00000372216 CCDC178Q5BJE1 867 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 CCDC194A0A1B0GVG4 234 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 PDIA4P13667 645 aaKnown RBP11.34□□□□□ -0.59
COL4A6-202ENST00000372216 SMTNL1A8MU46 457 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 POLD1P28340 1107 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 UBE4AQ14139 1066 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 ATP10AO60312 1499 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 PCDH11XQ9BZA7 1347 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 PCDH11YQ9BZA8 1340 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 EZRP15311 586 aaKnown RBP11.34□□□□□ -0.59
COL4A6-202ENST00000372216 POTEJP0CG39 1038 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 SKAP1Q86WV1 359 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 HOMER2Q9NSB8 354 aa11.34□□□□□ -0.59
COL4A6-202ENST00000372216 IQSEC3Q9UPP2 1182 aaPredicted RBP11.34□□□□□ -0.59
COL4A6-202ENST00000372216 TCOF1Q13428 1488 aaKnown RBP11.33□□□□□ -0.59
COL4A6-202ENST00000372216 PPP1R12BO60237 982 aaPredicted RBP11.33□□□□□ -0.6
COL4A6-202ENST00000372216 GCP02774 474 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 ZNF804AQ7Z570 1209 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 TSG101Q99816 390 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 ZNF408Q9H9D4 720 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 MAP3K5Q99683 1374 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 CYP7A1P22680 504 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 KIF5BP33176 963 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 NBPF14Q5TI25 921 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 BAG4O95429 457 aaKnown RBP11.33□□□□□ -0.6
COL4A6-202ENST00000372216 HOXC9P31274 260 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 CCDC150Q8NCX0 1101 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 BCCIPQ9P287 314 aaKnown RBP eCLIP11.33□□□□□ -0.6
COL4A6-202ENST00000372216 POLKQ9UBT6 870 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 JAKMIP3Q5VZ66 844 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 RAB34Q9BZG1 259 aa11.33□□□□□ -0.6
COL4A6-202ENST00000372216 CIZ1Q9ULV3 898 aaPredicted RBP11.33□□□□□ -0.6
COL4A6-202ENST00000372216 PICALMQ13492 652 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 ZGPATQ8N5A5 531 aaKnown RBP11.32□□□□□ -0.6
COL4A6-202ENST00000372216 YTHDC2Q9H6S0 1430 aaKnown RBP11.32□□□□□ -0.6
COL4A6-202ENST00000372216 GOLGA6L10A0A0M3HER8 536 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 KSR2Q6VAB6 950 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 BICD1Q96G01 975 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 MAST1Q9Y2H9 1570 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 SHANK2Q9UPX8 1470 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 ARL1P40616 181 aaPredicted RBP11.32□□□□□ -0.6
COL4A6-202ENST00000372216 ATP2B3Q16720 1220 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 MAPK8IP2Q13387 824 aaPredicted RBP11.32□□□□□ -0.6
COL4A6-202ENST00000372216 CKAP2LQ8IYA6 745 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 CCDC12Q8WUD4 166 aaPredicted RBP11.32□□□□□ -0.6
COL4A6-202ENST00000372216 GRM8O00222 908 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 MAP3K11Q16584 847 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 NCOA7Q8NI08 942 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 LIMCH1Q9UPQ0 1083 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 C8orf58Q8NAV2 365 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 SLC4A4Q9Y6R1 1079 aa11.32□□□□□ -0.6
COL4A6-202ENST00000372216 PLEKHH1Q9ULM0 1364 aa11.31□□□□□ -0.6
COL4A6-202ENST00000372216 TSPY3P0CV98 308 aa11.31□□□□□ -0.6
COL4A6-202ENST00000372216 TSPY8P0CW00 308 aa11.31□□□□□ -0.6
COL4A6-202ENST00000372216 LMBR1LQ6UX01 489 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms