RNA–Protein interactions for RNA: ENST00000368533.7

TPM3-212, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 3,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-212ENST00000368533 SLIT2O94813 1529 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 PXDNLA1KZ92 1463 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 IBTKQ9P2D0 1353 aaPredicted RBP12.99□□□□□ -0.33
TPM3-212ENST00000368533 BMP2KLQ5H9B9 411 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 LMBR1LQ6UX01 489 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 GLI3P10071 1580 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 CYP19A1P11511 503 aaPredicted RBP12.99□□□□□ -0.33
TPM3-212ENST00000368533 MX1P20591 662 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 MCM4P33991 863 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 ITPK1Q13572 414 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 KIAA1211Q6ZU35 1233 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 PDCL3Q9H2J4 239 aa12.99□□□□□ -0.33
TPM3-212ENST00000368533 NDUFB9Q9Y6M9 179 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 LOC102724428A0A0B4J2F2 783 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 SIK1P57059 783 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 POLA2Q14181 598 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 KIF6Q6ZMV9 814 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 PRDM10Q9NQV6 1147 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 FAM13BQ9NYF5 915 aa12.98□□□□□ -0.33
TPM3-212ENST00000368533 TLR7Q9NYK1 1049 aaKnown RBP12.98□□□□□ -0.33
TPM3-212ENST00000368533 ZHX1Q9UKY1 873 aaPredicted RBP12.97□□□□□ -0.33
TPM3-212ENST00000368533 DOT1LQ8TEK3 1739 aa12.97□□□□□ -0.33
TPM3-212ENST00000368533 TRAK2O60296 914 aa12.97□□□□□ -0.33
TPM3-212ENST00000368533 TRIM44Q96DX7 344 aaPredicted RBP12.97□□□□□ -0.33
TPM3-212ENST00000368533 CWC25Q9NXE8 425 aaPredicted RBP12.97□□□□□ -0.33
TPM3-212ENST00000368533 THRAP3Q9Y2W1 955 aaKnown RBP12.97□□□□□ -0.33
TPM3-212ENST00000368533 VPS72Q15906 364 aa12.97□□□□□ -0.33
TPM3-212ENST00000368533 AACSQ86V21 672 aa12.97□□□□□ -0.33
TPM3-212ENST00000368533 NRAPQ86VF7 1730 aa12.96□□□□□ -0.33
TPM3-212ENST00000368533 G3BP1Q13283 466 aaKnown RBP eCLIP12.96□□□□□ -0.331e-6■■■□□ 15.4
TPM3-212ENST00000368533 CRKLP46109 303 aaKnown RBP12.96□□□□□ -0.34
TPM3-212ENST00000368533 BICDL1Q6ZP65 573 aa12.96□□□□□ -0.34
TPM3-212ENST00000368533 DZIP3Q86Y13 1208 aaKnown RBP12.96□□□□□ -0.34
TPM3-212ENST00000368533 GRPEL1Q9HAV7 217 aa12.96□□□□□ -0.34
TPM3-212ENST00000368533 FGD1P98174 961 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 PALLDQ8WX93 1383 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 SASH1O94885 1247 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 BARGINQ6ZT62 677 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 FNBP4Q8N3X1 1017 aaPredicted RBP12.95□□□□□ -0.34
TPM3-212ENST00000368533 KIF1BPQ96EK5 621 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 CDCA7Q9BWT1 371 aaPredicted RBP12.95□□□□□ -0.34
TPM3-212ENST00000368533 CDC45O75419 566 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 CCDC24Q8N4L8 307 aa12.95□□□□□ -0.34
TPM3-212ENST00000368533 AFDNP55196 1824 aaKnown RBP12.94□□□□□ -0.34
TPM3-212ENST00000368533 GJD4Q96KN9 370 aaPredicted RBP12.94□□□□□ -0.34
TPM3-212ENST00000368533 IFIT2P09913 472 aaKnown RBP12.94□□□□□ -0.34
TPM3-212ENST00000368533 QTRT2Q9H974 415 aaKnown RBP12.94□□□□□ -0.34
TPM3-212ENST00000368533 RBM25P49756 843 aaKnown RBP12.93□□□□□ -0.34
TPM3-212ENST00000368533 TCIRG1Q13488 830 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 CLASRPQ8N2M8 674 aaKnown RBP12.93□□□□□ -0.34
TPM3-212ENST00000368533 EAF2Q96CJ1 260 aaPredicted RBP12.93□□□□□ -0.34
TPM3-212ENST00000368533 EDC3Q96F86 508 aaKnown RBP12.93□□□□□ -0.34
TPM3-212ENST00000368533 UBR2Q8IWV8 1755 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 ARFGEF2Q9Y6D5 1785 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 MRE11P49959 708 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 TFCP2Q12800 502 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 SEPT12Q8IYM1 358 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 PUS3Q9BZE2 481 aaKnown RBP12.93□□□□□ -0.34
TPM3-212ENST00000368533 PHF14O94880 888 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 LRRC24Q50LG9 513 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 GAS2L3Q86XJ1 694 aa12.93□□□□□ -0.34
TPM3-212ENST00000368533 PTPN12Q05209 780 aaKnown RBP12.92□□□□□ -0.34
TPM3-212ENST00000368533 INTS5Q6P9B9 1019 aaKnown RBP12.92□□□□□ -0.34
TPM3-212ENST00000368533 TEX13AQ9BXU3 409 aaPredicted RBP12.92□□□□□ -0.34
TPM3-212ENST00000368533 IL25Q9H293 177 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 BOLA2Q9H3K6 86 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 TRMT112Q9UI30 125 aaKnown RBP12.92□□□□□ -0.34
TPM3-212ENST00000368533 HCLS1P14317 486 aaPredicted RBP12.92□□□□□ -0.34
TPM3-212ENST00000368533 CASP7P55210 303 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 FOXO4P98177 505 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 LINC00116Q8NCU8 138 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 NEUROD6Q96NK8 337 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 CCDC87Q9NVE4 849 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 SPATA31A6Q5VVP1 1343 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 MAP3K15Q6ZN16 1313 aa12.92□□□□□ -0.34
TPM3-212ENST00000368533 SRCAPQ6ZRS2 3230 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 LAMB4A4D0S4 1761 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 CHGBP05060 677 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 H7C1W4 665 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 RAB11FIP3O75154 756 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 CD2BP2O95400 341 aaKnown RBP12.91□□□□□ -0.34
TPM3-212ENST00000368533 TPM2P07951 284 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 AMIGO3Q86WK7 504 aa12.91□□□□□ -0.34
TPM3-212ENST00000368533 UTYO14607 1347 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 SALL3Q9BXA9 1300 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 PLEKHG2Q9H7P9 1386 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 TIMM10P62072 90 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 PAPPAQ13219 1627 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 MTX1Q13505 466 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 GIGYF2Q6Y7W6 1299 aaKnown RBP12.9□□□□□ -0.34
TPM3-212ENST00000368533 CCDC191Q8NCU4 936 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 UTRNP46939 3433 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 UBN2Q6ZU65 1347 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 TAF7LQ5H9L4 462 aa12.9□□□□□ -0.34
TPM3-212ENST00000368533 DDX11L8A8MPP1 907 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 CASC1Q6TDU7 716 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 NLRP10Q86W26 655 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 PI4K2BQ8TCG2 481 aa12.89□□□□□ -0.35
TPM3-212ENST00000368533 TNPO1Q92973 898 aaKnown RBP12.89□□□□□ -0.35
TPM3-212ENST00000368533 SRP68Q9UHB9 627 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms