RNA–Protein interactions for RNA: ENST00000350148.9

SMAD9-201, Transcript of SMAD family member 9, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SMAD9, Length 5,447 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-201ENST00000350148 GIGYF1O75420 1035 aaPredicted RBP14.38□□□□□ -0.11
SMAD9-201ENST00000350148 CPS1P31327 1500 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 TNS3Q68CZ2 1445 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 GPTP24298 496 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 SLIT1O75093 1534 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 KDRP35968 1356 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 LMBR1LQ6UX01 489 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 BICDL1Q6ZP65 573 aa14.38□□□□□ -0.11
SMAD9-201ENST00000350148 IDH1O75874 414 aaKnown RBP14.38□□□□□ -0.11
SMAD9-201ENST00000350148 CCDC69A6NI79 296 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 DDX46Q7L014 1031 aaKnown RBP14.37□□□□□ -0.11
SMAD9-201ENST00000350148 RFC4P35249 363 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 TDO2P48775 406 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 JMYQ8N9B5 988 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 RNF41Q9H4P4 317 aaPredicted RBP14.37□□□□□ -0.11
SMAD9-201ENST00000350148 FER1L4A9Z1Z3 1794 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 RIMS1Q86UR5 1692 aaKnown RBP14.37□□□□□ -0.11
SMAD9-201ENST00000350148 C8orf34Q49A92 452 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 RPGRQ92834 1020 aaKnown RBP14.37□□□□□ -0.11
SMAD9-201ENST00000350148 SNX21Q969T3 373 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 ZMYND15Q9H091 742 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 FAM13BQ9NYF5 915 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 SPTY2D1Q68D10 685 aaPredicted RBP14.37□□□□□ -0.11
SMAD9-201ENST00000350148 PLEKHM2Q8IWE5 1019 aa14.37□□□□□ -0.11
SMAD9-201ENST00000350148 TRAK2O60296 914 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 CASTP20810 708 aaKnown RBP14.36□□□□□ -0.11
SMAD9-201ENST00000350148 OVOS2A0A0J9YW53 1432 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 OVOS2Q6IE36 1432 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 RBM10P98175 930 aaKnown RBP14.36□□□□□ -0.11
SMAD9-201ENST00000350148 ESYT1Q9BSJ8 1104 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 BECN2A8MW95 431 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 ST5P78524 1137 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 PRPF40BQ6NWY9 871 aaKnown RBP14.36□□□□□ -0.11
SMAD9-201ENST00000350148 LIMCH1Q9UPQ0 1083 aa14.36□□□□□ -0.11
SMAD9-201ENST00000350148 SETDB2Q96T68 719 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 LDHCP07864 332 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 C1orf167Q5SNV9 1468 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 CCDC85AQ96PX6 553 aaPredicted RBP14.35□□□□□ -0.11
SMAD9-201ENST00000350148 MRE11P49959 708 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 KRT85P78386 507 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 ATP2B3Q16720 1220 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 SASS6Q6UVJ0 657 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 BRINP3Q76B58 766 aa14.35□□□□□ -0.11
SMAD9-201ENST00000350148 ANKRD18AQ8IVF6 992 aa14.34□□□□□ -0.11
SMAD9-201ENST00000350148 CTDP1Q9Y5B0 961 aaPredicted RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 LARP1BQ659C4 914 aaKnown RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 UBAC1Q9BSL1 405 aa14.34□□□□□ -0.11
SMAD9-201ENST00000350148 HMGN5P82970 282 aaKnown RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 NBPF5PQ86XG9 351 aaPredicted RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 ZNF496Q96IT1 587 aaPredicted RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 MAP7D2Q96T17 732 aa14.34□□□□□ -0.11
SMAD9-201ENST00000350148 THRAP3Q9Y2W1 955 aaKnown RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 ARHGAP23Q9P227 1491 aa14.34□□□□□ -0.11
SMAD9-201ENST00000350148 ARHGEF28Q8N1W1 1705 aaKnown RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 CWF19L2Q2TBE0 894 aaKnown RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 DDX17Q92841 729 aaKnown RBP14.34□□□□□ -0.11
SMAD9-201ENST00000350148 NLRP3Q96P20 1036 aa14.34□□□□□ -0.11
SMAD9-201ENST00000350148 CFAP45Q9UL16 551 aa14.33□□□□□ -0.11
SMAD9-201ENST00000350148 RTCBQ9Y3I0 505 aaKnown RBP14.33□□□□□ -0.11
SMAD9-201ENST00000350148 CCDC196A0A1B0GTZ2 297 aa14.33□□□□□ -0.12
SMAD9-201ENST00000350148 ZGPATQ8N5A5 531 aaKnown RBP14.33□□□□□ -0.12
SMAD9-201ENST00000350148 TBC1D2Q9BYX2 928 aa14.33□□□□□ -0.12
SMAD9-201ENST00000350148 DCCP43146 1447 aa14.33□□□□□ -0.12
SMAD9-201ENST00000350148 TPM3P06753 285 aa14.33□□□□□ -0.12
SMAD9-201ENST00000350148 NAPBQ9H115 298 aa14.33□□□□□ -0.12
SMAD9-201ENST00000350148 ACSBG1Q96GR2 724 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 NAT10Q9H0A0 1025 aaKnown RBP14.32□□□□□ -0.12
SMAD9-201ENST00000350148 BICC1Q9H694 974 aaKnown RBP14.32□□□□□ -0.12
SMAD9-201ENST00000350148 NIP7Q9Y221 180 aaKnown RBP eCLIP14.32□□□□□ -0.12
SMAD9-201ENST00000350148 IRS4O14654 1257 aaPredicted RBP14.32□□□□□ -0.12
SMAD9-201ENST00000350148 GCKRQ14397 625 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 TPTE2Q6XPS3 522 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 RRP12Q5JTH9 1297 aaKnown RBP14.32□□□□□ -0.12
SMAD9-201ENST00000350148 CCDC87Q9NVE4 849 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 ITSN1Q15811 1721 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 PATL2C9JE40 543 aaKnown RBP14.32□□□□□ -0.12
SMAD9-201ENST00000350148 ZNF213O14771 459 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 TPM2P07951 284 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 MCM4P33991 863 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 GOLIM4O00461 696 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 FBXO3Q9UK99 471 aa14.32□□□□□ -0.12
SMAD9-201ENST00000350148 GSTO1P78417 241 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 FOXD4L6Q3SYB3 417 aaPredicted RBP14.31□□□□□ -0.12
SMAD9-201ENST00000350148 FOXD4L3Q6VB84 417 aaPredicted RBP14.31□□□□□ -0.12
SMAD9-201ENST00000350148 LRRC7Q96NW7 1537 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 ANKRD2Q9GZV1 360 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 SSH3Q8TE77 659 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 ANKIB1Q9P2G1 1089 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 SETD1BQ9UPS6 1966 aaKnown RBP14.31□□□□□ -0.12
SMAD9-201ENST00000350148 MCMDC2Q4G0Z9 681 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 ANKRD20A12PQ8NF67 263 aa14.31□□□□□ -0.12
SMAD9-201ENST00000350148 ZNF335Q9H4Z2 1342 aaPredicted RBP14.3□□□□□ -0.12
SMAD9-201ENST00000350148 EYA2O00167 538 aa14.3□□□□□ -0.12
SMAD9-201ENST00000350148 ABCF2Q9UG63 623 aa14.3□□□□□ -0.12
SMAD9-201ENST00000350148 PDE8AO60658 829 aa14.3□□□□□ -0.12
SMAD9-201ENST00000350148 TPD52L1Q16890 204 aaPredicted RBP14.3□□□□□ -0.12
SMAD9-201ENST00000350148 DZIP1Q86YF9 867 aaKnown RBP14.29□□□□□ -0.12
SMAD9-201ENST00000350148 SH3TC1Q8TE82 1336 aa14.29□□□□□ -0.12
SMAD9-201ENST00000350148 NOL7Q9UMY1 257 aaKnown RBP14.29□□□□□ -0.12
SMAD9-201ENST00000350148 KINO60870 393 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms