RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 CWC22Q9HCG8 908 aaKnown RBP19.32■□□□□ 0.68
USH1C-202ENST00000318024 ATP5J2-PTCD1G3V325 749 aa19.32■□□□□ 0.68
USH1C-202ENST00000318024 ATP8B2P98198 1209 aa19.32■□□□□ 0.68
USH1C-202ENST00000318024 CAVIN1Q6NZI2 390 aaKnown RBP19.32■□□□□ 0.68
USH1C-202ENST00000318024 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.32■□□□□ 0.68
USH1C-202ENST00000318024 WNK3Q9BYP7 1800 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 SMARCA5O60264 1052 aaPredicted RBP19.31■□□□□ 0.68
USH1C-202ENST00000318024 HMMRO75330 724 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 ALDH1L1O75891 902 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 NEXNQ0ZGT2 675 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 GPT2Q8TD30 523 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 JARID2Q92833 1246 aaPredicted RBP19.31■□□□□ 0.68
USH1C-202ENST00000318024 METTL22Q9BUU2 404 aaPredicted RBP19.31■□□□□ 0.68
USH1C-202ENST00000318024 EXOC6BQ9Y2D4 811 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 UBR2Q8IWV8 1755 aa19.31■□□□□ 0.68
USH1C-202ENST00000318024 C16orf71Q8IYS4 520 aaPredicted RBP19.31■□□□□ 0.68
USH1C-202ENST00000318024 ITGB4P16144 1822 aa19.3■□□□□ 0.68
USH1C-202ENST00000318024 PAPPAQ13219 1627 aa19.3■□□□□ 0.68
USH1C-202ENST00000318024 ANP32BQ92688 251 aaKnown RBP19.3■□□□□ 0.68
USH1C-202ENST00000318024 ZBTB3Q9H5J0 574 aa19.3■□□□□ 0.68
USH1C-202ENST00000318024 NEURL1BA8MQ27 555 aa19.29■□□□□ 0.68
USH1C-202ENST00000318024 PPP1R42Q7Z4L9 355 aa19.29■□□□□ 0.68
USH1C-202ENST00000318024 STARD3NLO95772 234 aa19.29■□□□□ 0.68
USH1C-202ENST00000318024 MSNP26038 577 aaKnown RBP19.29■□□□□ 0.68
USH1C-202ENST00000318024 PLBD2Q8NHP8 589 aa19.29■□□□□ 0.68
USH1C-202ENST00000318024 GJD4Q96KN9 370 aaPredicted RBP19.29■□□□□ 0.68
USH1C-202ENST00000318024 GRM8O00222 908 aa19.28■□□□□ 0.68
USH1C-202ENST00000318024 ZGPATQ8N5A5 531 aaKnown RBP19.28■□□□□ 0.68
USH1C-202ENST00000318024 OTUD7AQ8TE49 926 aaPredicted RBP19.28■□□□□ 0.68
USH1C-202ENST00000318024 TEX13AQ9BXU3 409 aaPredicted RBP19.28■□□□□ 0.68
USH1C-202ENST00000318024 SRGAP3O43295 1099 aa19.28■□□□□ 0.68
USH1C-202ENST00000318024 PTF1AQ7RTS3 328 aa19.28■□□□□ 0.68
USH1C-202ENST00000318024 SDSP20132 328 aa19.27■□□□□ 0.68
USH1C-202ENST00000318024 PODXL2Q9NZ53 605 aa19.27■□□□□ 0.68
USH1C-202ENST00000318024 CYP19A1P11511 503 aaPredicted RBP19.27■□□□□ 0.67
USH1C-202ENST00000318024 GCKRQ14397 625 aa19.27■□□□□ 0.67
USH1C-202ENST00000318024 DOT1LQ8TEK3 1739 aa19.26■□□□□ 0.67
USH1C-202ENST00000318024 SUCLG2Q96I99 432 aa19.26■□□□□ 0.67
USH1C-202ENST00000318024 ATP6V1AP38606 617 aa19.25■□□□□ 0.67
USH1C-202ENST00000318024 KAZALD1Q96I82 304 aa19.25■□□□□ 0.67
USH1C-202ENST00000318024 TMEM63CQ9P1W3 806 aa19.25■□□□□ 0.67
USH1C-202ENST00000318024 LAMB4A4D0S4 1761 aa19.24■□□□□ 0.67
USH1C-202ENST00000318024 PRPF40AO75400 957 aaKnown RBP19.24■□□□□ 0.67
USH1C-202ENST00000318024 SSH3Q8TE77 659 aa19.24■□□□□ 0.67
USH1C-202ENST00000318024 RBM27Q9P2N5 1060 aaKnown RBP19.24■□□□□ 0.67
USH1C-202ENST00000318024 ZBTB1Q9Y2K1 713 aa19.24■□□□□ 0.67
USH1C-202ENST00000318024 LRSAM1Q6UWE0 723 aa19.24■□□□□ 0.67
USH1C-202ENST00000318024 BICC1Q9H694 974 aaKnown RBP19.24■□□□□ 0.67
USH1C-202ENST00000318024 LOC102724428A0A0B4J2F2 783 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 SURF6O75683 361 aaKnown RBP19.23■□□□□ 0.67
USH1C-202ENST00000318024 KCNQ4P56696 695 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 SIK1P57059 783 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 QTRT2Q9H974 415 aaKnown RBP19.23■□□□□ 0.67
USH1C-202ENST00000318024 NSFL1CQ9UNZ2 370 aaKnown RBP19.23■□□□□ 0.67
USH1C-202ENST00000318024 ZKSCAN5Q9Y2L8 839 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 EP400Q96L91 3159 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 TUBGCP6Q96RT7 1819 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 N4BP2Q86UW6 1770 aaPredicted RBP19.23■□□□□ 0.67
USH1C-202ENST00000318024 A0A087WZG4 1122 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 ST18O60284 1047 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 UBE3BQ7Z3V4 1068 aa19.23■□□□□ 0.67
USH1C-202ENST00000318024 TRPC5Q9UL62 973 aaPredicted RBP19.23■□□□□ 0.67
USH1C-202ENST00000318024 NCLP19338 710 aaKnown RBP19.22■□□□□ 0.67
USH1C-202ENST00000318024 MCM5P33992 734 aa19.22■□□□□ 0.67
USH1C-202ENST00000318024 POLA2Q14181 598 aa19.22■□□□□ 0.67
USH1C-202ENST00000318024 EPHA10Q5JZY3 1008 aa19.21■□□□□ 0.67
USH1C-202ENST00000318024 UTYO14607 1347 aa19.21■□□□□ 0.67
USH1C-202ENST00000318024 PALLDQ8WX93 1383 aa19.21■□□□□ 0.67
USH1C-202ENST00000318024 ITPK1Q13572 414 aa19.21■□□□□ 0.67
USH1C-202ENST00000318024 SEPT12Q8IYM1 358 aa19.2■□□□□ 0.66
USH1C-202ENST00000318024 CHAMP1Q96JM3 812 aa19.2■□□□□ 0.66
USH1C-202ENST00000318024 LRRCC1Q9C099 1032 aa19.2■□□□□ 0.66
USH1C-202ENST00000318024 OSBPL3Q9H4L5 887 aa19.2■□□□□ 0.66
USH1C-202ENST00000318024 PA2G4Q9UQ80 394 aaKnown RBP19.2■□□□□ 0.66
USH1C-202ENST00000318024 IL1RAPL2Q9NP60 686 aa19.2■□□□□ 0.66
USH1C-202ENST00000318024 R3HCC1Q9Y3T6 440 aaKnown RBP19.2■□□□□ 0.66
USH1C-202ENST00000318024 KIF6Q6ZMV9 814 aa19.19■□□□□ 0.66
USH1C-202ENST00000318024 TBC1D2BQ9UPU7 963 aa19.19■□□□□ 0.66
USH1C-202ENST00000318024 REC8O95072 547 aa19.19■□□□□ 0.66
USH1C-202ENST00000318024 HLFQ16534 295 aa19.19■□□□□ 0.66
USH1C-202ENST00000318024 CRKLP46109 303 aaKnown RBP19.18■□□□□ 0.66
USH1C-202ENST00000318024 ERC2O15083 957 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 CUL4AQ13619 759 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 TSHZ3Q63HK5 1081 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 INTS5Q6P9B9 1019 aaKnown RBP19.17■□□□□ 0.66
USH1C-202ENST00000318024 KLHDC4Q8TBB5 520 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 CWC25Q9NXE8 425 aaPredicted RBP19.17■□□□□ 0.66
USH1C-202ENST00000318024 HDAC5Q9UQL6 1122 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 BRD1O95696 1058 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 MTX1Q13505 466 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 MAP7D2Q96T17 732 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 ATRNO75882 1429 aa19.17■□□□□ 0.66
USH1C-202ENST00000318024 SYCE3A1L190 88 aa19.16■□□□□ 0.66
USH1C-202ENST00000318024 TCIRG1Q13488 830 aa19.16■□□□□ 0.66
USH1C-202ENST00000318024 CASC1Q6TDU7 716 aa19.16■□□□□ 0.66
USH1C-202ENST00000318024 ARFGEF2Q9Y6D5 1785 aa19.16■□□□□ 0.66
USH1C-202ENST00000318024 GPTP24298 496 aa19.16■□□□□ 0.66
USH1C-202ENST00000318024 OS9Q13438 667 aaPredicted RBP19.16■□□□□ 0.66
USH1C-202ENST00000318024 SMARCC1Q92922 1105 aaPredicted RBP19.16■□□□□ 0.66
USH1C-202ENST00000318024 IL17RAQ96F46 866 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms