RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 MYCBPQ99417 103 aaPredicted RBP9.99□□□□□ -0.81
USF3-201ENST00000316407 CCDC129Q6ZRS4 1044 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 LIMCH1Q9UPQ0 1083 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 KCNK9Q9NPC2 374 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 DDX46Q7L014 1031 aaKnown RBP9.99□□□□□ -0.81
USF3-201ENST00000316407 CEP128Q6ZU80 1094 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 FAM184BQ9ULE4 1060 aa9.99□□□□□ -0.81
USF3-201ENST00000316407 AFMP43652 599 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 STMN2Q93045 179 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 N4BP3O15049 544 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 LACTBP83111 547 aaPredicted RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 MROH2BQ7Z745 1585 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 LMOD1P29536 600 aaPredicted RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 PPM1FP49593 454 aaPredicted RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 SYT10Q6XYQ8 523 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 RAPGEF4Q8WZA2 1011 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 MINDY4BA8MYZ0 360 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 GJC1P36383 396 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 U3KPZ7 1027 aaPredicted RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 INPP5BP32019 993 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 WDR63Q8IWG1 891 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 GNL3LQ9NVN8 582 aaKnown RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 TPD52P55327 224 aaPredicted RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 SH2B1Q9NRF2 756 aaPredicted RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 KIF20AO95235 890 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 AIDAQ96BJ3 306 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 FGD6Q6ZV73 1430 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 SUPT6HQ7KZ85 1726 aaKnown RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 HDXQ7Z353 690 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 THUMPD2Q9BTF0 503 aaKnown RBP9.98□□□□□ -0.81
USF3-201ENST00000316407 SCAPERQ9BY12 1400 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 PPP2R3AQ06190 1150 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 TRIM47Q96LD4 638 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 STIM2Q9P246 746 aa9.98□□□□□ -0.81
USF3-201ENST00000316407 RIOK3O14730 519 aaKnown RBP9.97□□□□□ -0.81
USF3-201ENST00000316407 CCDC40Q4G0X9 1142 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 GRIPAP1Q4V328 841 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 DZIP1Q86YF9 867 aaKnown RBP9.97□□□□□ -0.81
USF3-201ENST00000316407 EPSTI1Q96J88 318 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 TTC36A6NLP5 189 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 PIP4K2BP78356 416 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 TBC1D32Q96NH3 1257 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 LRP2BPQ9P2M1 347 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 MORC4Q8TE76 937 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 RASAL2Q9UJF2 1139 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 SLC12A7Q9Y666 1083 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 FEZ1Q99689 392 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 TACO1Q9BSH4 297 aaKnown RBP9.97□□□□□ -0.81
USF3-201ENST00000316407 TLDC2A0PJX2 215 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 GSTA5Q7RTV2 222 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 TSNARE1Q96NA8 513 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 ZC3H6P61129 1189 aaKnown RBP9.97□□□□□ -0.81
USF3-201ENST00000316407 MICU3Q86XE3 530 aa9.97□□□□□ -0.81
USF3-201ENST00000316407 VIMP08670 466 aaKnown RBP9.97□□□□□ -0.81
USF3-201ENST00000316407 FAM200AQ8TCP9 573 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 ANAPC4Q9UJX5 808 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 RPAINQ86UA6 219 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 BOLA2Q9H3K6 86 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 MPHOSPH8Q99549 860 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 SETDB1Q15047 1291 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 B4GALNT4Q76KP1 1039 aa9.96□□□□□ -0.81
USF3-201ENST00000316407 RNF168Q8IYW5 571 aaPredicted RBP9.96□□□□□ -0.81
USF3-201ENST00000316407 ZNF853P0CG23 659 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 LRRC43Q8N309 656 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 MRRFQ96E11 262 aaKnown RBP9.96□□□□□ -0.82
USF3-201ENST00000316407 PPP1R9BQ96SB3 815 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 NDUFAB1O14561 156 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 AKR1B10O60218 316 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 MAP7D1Q3KQU3 841 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 GBP1P32455 592 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 SSRP1Q08945 709 aaKnown RBP9.96□□□□□ -0.82
USF3-201ENST00000316407 DDX27Q96GQ7 796 aaKnown RBP9.96□□□□□ -0.82
USF3-201ENST00000316407 STK38LQ9Y2H1 464 aa9.96□□□□□ -0.82
USF3-201ENST00000316407 GSDMBQ8TAX9 411 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 STMN4Q9H169 189 aaPredicted RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 NACADO15069 1562 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 ZNF569Q5MCW4 686 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 KSR1Q8IVT5 923 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 EVCP57679 992 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 CCDC50Q8IVM0 306 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 NECAB1Q8N987 351 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 LUC7L2Q9Y383 392 aaKnown RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 SESN3P58005 492 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 DNM1Q05193 864 aaKnown RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 ARHGEF2Q92974 986 aaKnown RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 TYRO3Q06418 890 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 TBC1D31Q96DN5 1066 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.95□□□□□ -0.82
USF3-201ENST00000316407 ABCF2Q9UG63 623 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 CTNNA3Q9UI47 895 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 PRC1O43663 620 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 ERCC5P28715 1186 aaPredicted RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 MICAL1Q8TDZ2 1067 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 SREK1Q8WXA9 508 aaKnown RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 SULT6B1Q6IMI4 303 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 MARCKSP29966 332 aaPredicted RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 SYKP43405 635 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 EXOC1Q9NV70 894 aa9.95□□□□□ -0.82
USF3-201ENST00000316407 POLA1P09884 1462 aaPredicted RBP9.95□□□□□ -0.82
USF3-201ENST00000316407 PNMA8AQ86V59 439 aaPredicted RBP9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms