RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 RTL5Q5HYW3 569 aaPredicted RBP20.3■□□□□ 0.84
CCDC40-201ENST00000269318 CNTROBQ8N137 903 aa20.3■□□□□ 0.84
CCDC40-201ENST00000269318 GPATCH3Q96I76 525 aa20.3■□□□□ 0.84
CCDC40-201ENST00000269318 TRIM28Q13263 835 aaKnown RBP20.29■□□□□ 0.84
CCDC40-201ENST00000269318 LMBR1LQ6UX01 489 aa20.29■□□□□ 0.84
CCDC40-201ENST00000269318 MARCH10Q8NA82 808 aaPredicted RBP20.29■□□□□ 0.84
CCDC40-201ENST00000269318 KIF6Q6ZMV9 814 aa20.28■□□□□ 0.84
CCDC40-201ENST00000269318 SPRYD3Q8NCJ5 442 aa20.28■□□□□ 0.84
CCDC40-201ENST00000269318 IL25Q9H293 177 aa20.28■□□□□ 0.84
CCDC40-201ENST00000269318 MAP3K15Q6ZN16 1313 aa20.27■□□□□ 0.84
CCDC40-201ENST00000269318 EPB41L2O43491 1005 aaKnown RBP20.26■□□□□ 0.83
CCDC40-201ENST00000269318 DDIT3P35638 169 aa20.26■□□□□ 0.83
CCDC40-201ENST00000269318 MYT1Q01538 1121 aa20.26■□□□□ 0.83
CCDC40-201ENST00000269318 CCDC8Q9H0W5 538 aaPredicted RBP20.26■□□□□ 0.83
CCDC40-201ENST00000269318 TLR7Q9NYK1 1049 aaKnown RBP20.26■□□□□ 0.83
CCDC40-201ENST00000269318 ZNF330Q9Y3S2 320 aaPredicted RBP20.26■□□□□ 0.83
CCDC40-201ENST00000269318 K7ELQ4 463 aaPredicted RBP20.26■□□□□ 0.83
CCDC40-201ENST00000269318 ZBTB1Q9Y2K1 713 aa20.25■□□□□ 0.83
CCDC40-201ENST00000269318 JCADQ9P266 1359 aa20.25■□□□□ 0.83
CCDC40-201ENST00000269318 BCL9LQ86UU0 1499 aa20.25■□□□□ 0.83
CCDC40-201ENST00000269318 SGSM2O43147 1006 aa20.25■□□□□ 0.83
CCDC40-201ENST00000269318 GIGYF2Q6Y7W6 1299 aaKnown RBP20.25■□□□□ 0.83
CCDC40-201ENST00000269318 ANO2Q9NQ90 1003 aa20.25■□□□□ 0.83
CCDC40-201ENST00000269318 CCDC9Q9Y3X0 531 aaKnown RBP20.25■□□□□ 0.83
CCDC40-201ENST00000269318 TFCP2Q12800 502 aa20.24■□□□□ 0.83
CCDC40-201ENST00000269318 IL17RAQ96F46 866 aa20.24■□□□□ 0.83
CCDC40-201ENST00000269318 TNNI3KQ59H18 835 aa20.23■□□□□ 0.83
CCDC40-201ENST00000269318 FPGT-TNNI3KV9GXZ4 949 aa20.23■□□□□ 0.83
CCDC40-201ENST00000269318 KAT6BQ8WYB5 2073 aa20.23■□□□□ 0.83
CCDC40-201ENST00000269318 FRAT2O75474 233 aaPredicted RBP20.23■□□□□ 0.83
CCDC40-201ENST00000269318 HLFQ16534 295 aa20.23■□□□□ 0.83
CCDC40-201ENST00000269318 EVI5LQ96CN4 794 aa20.23■□□□□ 0.83
CCDC40-201ENST00000269318 CHMP5Q9NZZ3 219 aa20.23■□□□□ 0.83
CCDC40-201ENST00000269318 CICQ96RK0 1608 aaPredicted RBP20.23■□□□□ 0.83
CCDC40-201ENST00000269318 PCCAP05165 728 aaPredicted RBP20.22■□□□□ 0.83
CCDC40-201ENST00000269318 IL6STP40189 918 aaPredicted RBP20.22■□□□□ 0.83
CCDC40-201ENST00000269318 ACSBG1Q96GR2 724 aa20.22■□□□□ 0.83
CCDC40-201ENST00000269318 ANAPC15P60006 121 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 VPS72Q15906 364 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 ATG9AQ7Z3C6 839 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 PLA2G12BQ9BX93 195 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 DBNLQ9UJU6 430 aaKnown RBP20.21■□□□□ 0.83
CCDC40-201ENST00000269318 CHMP3Q9Y3E7 222 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 MCCP23508 829 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 PALD1Q9ULE6 856 aa20.21■□□□□ 0.83
CCDC40-201ENST00000269318 ANKRD36CQ5JPF3 1778 aa20.2■□□□□ 0.82
CCDC40-201ENST00000269318 ZBTB38Q8NAP3 1195 aaPredicted RBP20.2■□□□□ 0.82
CCDC40-201ENST00000269318 C8orf37Q96NL8 207 aa20.2■□□□□ 0.82
CCDC40-201ENST00000269318 RREB1Q92766 1687 aa20.2■□□□□ 0.82
CCDC40-201ENST00000269318 RAD50Q92878 1312 aa20.2■□□□□ 0.82
CCDC40-201ENST00000269318 HSP90AB3PQ58FF7 597 aa20.19■□□□□ 0.82
CCDC40-201ENST00000269318 LSG1Q9H089 658 aaKnown RBP20.19■□□□□ 0.82
CCDC40-201ENST00000269318 ERVV-1B6SEH8 477 aa20.19■□□□□ 0.82
CCDC40-201ENST00000269318 HSPA4P34932 840 aa20.19■□□□□ 0.82
CCDC40-201ENST00000269318 INTS5Q6P9B9 1019 aaKnown RBP20.19■□□□□ 0.82
CCDC40-201ENST00000269318 CWC27Q6UX04 472 aaKnown RBP20.19■□□□□ 0.82
CCDC40-201ENST00000269318 NLRP10Q86W26 655 aa20.19■□□□□ 0.82
CCDC40-201ENST00000269318 FNBP4Q8N3X1 1017 aaPredicted RBP20.19■□□□□ 0.82
CCDC40-201ENST00000269318 NGLY1Q96IV0 654 aa20.19■□□□□ 0.82
CCDC40-201ENST00000269318 ST18O60284 1047 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 ATP5JP18859 108 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 FAM98CQ17RN3 349 aaKnown RBP20.18■□□□□ 0.82
CCDC40-201ENST00000269318 FAM89AQ96GI7 184 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 ARXQ96QS3 562 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 BOLA2Q9H3K6 86 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 DIAPH3Q9NSV4 1193 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 CDHR2Q9BYE9 1310 aa20.18■□□□□ 0.82
CCDC40-201ENST00000269318 LOC102724428A0A0B4J2F2 783 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 EYA2O00167 538 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 CIAO1O76071 339 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 IL15P40933 162 aaPredicted RBP20.17■□□□□ 0.82
CCDC40-201ENST00000269318 EIF5P55010 431 aaKnown RBP20.17■□□□□ 0.82
CCDC40-201ENST00000269318 SIK1P57059 783 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 GPR108Q9NPR9 543 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 CSF1RP07333 972 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 DZIP3Q86Y13 1208 aaKnown RBP20.17■□□□□ 0.82
CCDC40-201ENST00000269318 RUFY2Q8WXA3 655 aa20.17■□□□□ 0.82
CCDC40-201ENST00000269318 CIZ1Q9ULV3 898 aaPredicted RBP20.17■□□□□ 0.82
CCDC40-201ENST00000269318 NUP98P52948 1817 aa20.16■□□□□ 0.82
CCDC40-201ENST00000269318 PALLDQ8WX93 1383 aa20.16■□□□□ 0.82
CCDC40-201ENST00000269318 ATP6V1AP38606 617 aa20.16■□□□□ 0.82
CCDC40-201ENST00000269318 ZNF594Q96JF6 807 aaPredicted RBP20.16■□□□□ 0.82
CCDC40-201ENST00000269318 DBNDD2Q9BQY9 259 aa20.16■□□□□ 0.82
CCDC40-201ENST00000269318 CCDC87Q9NVE4 849 aa20.16■□□□□ 0.82
CCDC40-201ENST00000269318 GPTP24298 496 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 ITPK1Q13572 414 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 LRRC24Q50LG9 513 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 SPATA31A6Q5VVP1 1343 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 A0A0G2JS52 829 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 HIP1O00291 1037 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 KCNQ2O43526 872 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 CRKLP46109 303 aaKnown RBP20.15■□□□□ 0.82
CCDC40-201ENST00000269318 SNRKQ9NRH2 765 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 TBC1D2BQ9UPU7 963 aa20.15■□□□□ 0.82
CCDC40-201ENST00000269318 ZNF609O15014 1411 aa20.14■□□□□ 0.81
CCDC40-201ENST00000269318 HSP90AA1P07900 732 aaKnown RBP20.14■□□□□ 0.81
CCDC40-201ENST00000269318 CCDC57Q2TAC2 916 aa20.14■□□□□ 0.81
CCDC40-201ENST00000269318 ZNF34Q8IZ26 560 aa20.14■□□□□ 0.81
CCDC40-201ENST00000269318 SYNE4Q8N205 404 aa20.14■□□□□ 0.81
CCDC40-201ENST00000269318 FBXO3Q9UK99 471 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms