RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CLK3P49761 638 aaKnown RBP15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 HSF1Q00613 529 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 FUT5Q11128 374 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 ATAD3BQ5T9A4 648 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 DLEU7Q6UYE1 221 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 C16orf62Q7Z3J2 963 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 MARCH3Q86UD3 253 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 GHDCQ8N2G8 530 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 DPP10Q8N608 796 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 TBL1XR1Q9BZK7 514 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 QPCTLQ9NXS2 382 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 VAPAQ9P0L0 249 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 ARMCX1Q9P291 453 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 RELNP78509 3460 aa15.1■□□□□ 0.01
CCDC28A-202ENST00000611852 PRAMEF27A3QJZ7 478 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 B4DXG7 233 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 CDC40O60508 579 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 FCMRO60667 390 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 STX11O75558 287 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 PDE9AO76083 593 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 WISP1O95388 367 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 GDF1P27539 372 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 ANXA11P50995 505 aaKnown RBP15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 ELOAQ14241 798 aaKnown RBP15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 SLC10A1Q14973 349 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 FLYWCH1Q4VC44 716 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 OR5M10Q6IEU7 315 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 OLIG3Q7RTU3 272 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 PLCZ1Q86YW0 608 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 CHERPQ8IWX8 916 aaKnown RBP15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 ROPN1LQ96C74 230 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 ZNF350Q9GZX5 532 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 GMEB1Q9Y692 573 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 CAPN7Q9Y6W3 813 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 MYO18BQ8IUG5 2567 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 DNAJC13O75165 2243 aa15.09■□□□□ 0.01
CCDC28A-202ENST00000611852 NPIPA5A0A0B4J1W7 369 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 NPIPA7E9PJI5 369 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 NPIPB9F8W1W9 429 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 FBP2O00757 339 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 SLC22A2O15244 555 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 CCDC22O60826 627 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 CBR3O75828 277 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 ZIC2O95409 532 aaPredicted RBP15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 ANGPTL1O95841 491 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 IGHG3P01860 377 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 GUSBP08236 651 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 NPIPA8P0DM63 369 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 ETFAP13804 333 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 HPGDP15428 266 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 DCTP40126 519 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 CRATP43155 626 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 STX5Q13190 355 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 EIF2S3LQ2VIR3 472 aaKnown RBP15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 AP1ARQ63HQ0 302 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 PIGWQ7Z7B1 504 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 MTDHQ86UE4 582 aaKnown RBP15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 HOXD1Q9GZZ0 328 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 ACKR4Q9NPB9 350 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 SDHAF3Q9NRP4 125 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 PPP4R1LQ9P1A2 415 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 FBXL2Q9UKC9 423 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 MKLN1Q9UL63 735 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 LIPT1Q9Y234 373 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 LIPGQ9Y5X9 500 aa15.08■□□□□ 0.01
CCDC28A-202ENST00000611852 FREM3P0C091 2139 aa15.08■□□□□ 0
CCDC28A-202ENST00000611852 A0A1B0GTH9 108 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 A0A1W2PQD3 144 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 SCDO00767 359 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 HPNP05981 417 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 ATP12AP54707 1039 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 C17orf67Q0P5P2 114 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 RGNQ15493 299 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 MAPRE2Q15555 327 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 GPR68Q15743 365 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 SYPL1Q16563 259 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 KLHL26Q53HC5 615 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 FGD2Q7Z6J4 655 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 DHDDSQ86SQ9 333 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 BCAS4Q8TDM0 211 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 DUSP19Q8WTR2 217 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 RAD21L1Q9H4I0 556 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 POLE3Q9NRF9 147 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 KCNE5Q9UJ90 142 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 UBR5O95071 2799 aaPredicted RBP15.07■□□□□ 0
CCDC28A-202ENST00000611852 GTF3C1Q12789 2109 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 IGLV3-32A0A0A0MS00 114 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 LOC100653049A0A140TA62 436 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 A0A1B0GVC2 190 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 NDUFAB1O14561 156 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 ZNHIT1O43257 154 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 NDUFB5O43674 189 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 TRAPPC6AO75865 159 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 KRT34O76011 436 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 FAM107AO95990 144 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 PPIBP23284 216 aaKnown RBP15.07■□□□□ 0
CCDC28A-202ENST00000611852 DSTNP60981 165 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 FADDQ13158 208 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 MAPK11Q15759 364 aa15.07■□□□□ 0
CCDC28A-202ENST00000611852 GPAT3Q53EU6 434 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms