RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	C6orf120	Q7Z4R8	191 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	C7orf57	Q8NEG2	295 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	KBTBD8	Q8NFY9	601 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	NDNF	Q8TB73	568 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	SFXN5	Q8TD22	340 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ZDHHC19	Q8WVZ1	309 aa	Predicted RBP	10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	GGH	Q92820	318 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ELP4	Q96EB1	424 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341		Q96MT0	163 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF607	Q96SK3	696 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	NXF2	Q9GZY0	626 aa	Known RBP	10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	SIAE	Q9HAT2	523 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	APMAP	Q9HDC9	416 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	MKKS	Q9NPJ1	570 aa	Predicted RBP	10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ZCCHC3	Q9NUD5	404 aa	Known RBP	10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF226	Q9NYT6	803 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	ACSL6	Q9UKU0	697 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	UGT2A1	Q9Y4X1	527 aa		10.89	□□□□□ -0.67
VRK3-223	ENST00000601341	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TMEM247	A6NEH6	219 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341		B4E171	279 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MAGEB3	O15480	346 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	EMC8	O43402	210 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	AIRE	O43918	545 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CDC123	O75794	336 aa	Predicted RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MFN2	O95140	757 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TIAF1	O95411	115 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	OPN1SW	P03999	348 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TFPT	P0C1Z6	253 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CCL4	P13236	92 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TSPAN7	P41732	249 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CLK1	P49759	484 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ANXA11	P50995	505 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PPP5C	P53041	499 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	VBP1	P61758	197 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ITGAD	Q13349	1161 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TP53BP2	Q13625	1128 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	DGCR6	Q14129	220 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ERV3-1	Q14264	604 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	GNA13	Q14344	377 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TIGD6	Q17RP2	521 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ISX	Q2M1V0	245 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TRIM16L	Q309B1	348 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TMEM201	Q5SNT2	666 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PRAMEF8	Q5VWM4	474 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PRAMEF7	Q5VXH5	474 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CDCP2	Q5VXM1	449 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MEDAG	Q5VYS4	303 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	RNLS	Q5VYX0	342 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	C19orf48	Q6RUI8	117 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TMEM107	Q6UX40	140 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CCDC103	Q8IW40	242 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	OR56A1	Q8NGH5	318 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF675	Q8TD23	568 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC38A5	Q8WUX1	472 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PROX1	Q92786	737 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	RBM18	Q96H35	190 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ALPK1	Q96QP1	1244 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	NIPSNAP1	Q9BPW8	284 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	BTBD2	Q9BX70	525 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TOR4A	Q9NXH8	423 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MMACHC	Q9Y4U1	282 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	FAAH	O00519	579 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	OR10H2	O60403	315 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CPNE3	O75131	537 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CNOT3	O75175	753 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SERPINB7	O75635	380 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	RECK	O95980	971 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MT-CO3	P00414	261 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	LCK	P06239	509 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	NT5E	P21589	574 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	MC3R	P41968	323 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC15A1	P46059	708 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	OR1E2	P47887	323 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CRISP1	P54107	249 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	IGLV3-21	P80748	117 aa	Predicted RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	DCD	P81605	110 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ALDH6A1	Q02252	535 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	COX10	Q12887	443 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SERTAD2	Q14140	314 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	PTGES3	Q15185	160 aa	Known RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	LTB4R	Q15722	352 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF404	Q494X3	552 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	NKAIN1	Q4KMZ8	207 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CD300LD	Q6UXZ3	194 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SZRD1	Q7Z422	152 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	TAGAP	Q8N103	731 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	STX19	Q8N4C7	294 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SLC38A9	Q8NBW4	561 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	NR4A3	Q92570	626 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	KAT2A	Q92830	837 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	UBE2F	Q969M7	185 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	LIN37	Q96GY3	246 aa	Predicted RBP	10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ZNF354B	Q96LW1	612 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	FAM210A	Q96ND0	272 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	CTRC	Q99895	268 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	SPATA5L1	Q9BVQ7	753 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	ALOXE3	Q9BYJ1	711 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	DCSTAMP	Q9H295	470 aa		10.88	□□□□□ -0.67
VRK3-223	ENST00000601341	LANCL2	Q9NS86	450 aa		10.88	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms