RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ARMCX4Q5H9R4 360 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 MFSD4BQ5TF39 518 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 PRAMEF17Q5VTA0 474 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 PAQR6Q6TCH4 344 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 SLC46A3Q7Z3Q1 461 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 SLCO6A1Q86UG4 719 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 SLC15A4Q8N697 577 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 WDR36Q8NI36 951 aaKnown RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 DYNC2LI1Q8TCX1 351 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 RIT1Q92963 219 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 HSPBAP1Q96EW2 488 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 SHDQ96IW2 340 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 NELL2Q99435 816 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 TSSK6Q9BXA6 273 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 POLDIP3Q9BY77 421 aaKnown RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 OR51E2Q9H255 320 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 ZBTB20Q9HC78 741 aaPredicted RBP13.43□□□□□ -0.26
VRK3-217ENST00000599538 LRIT1Q9P2V4 623 aa13.43□□□□□ -0.26
VRK3-217ENST00000599538 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 CDHR4A6H8M9 788 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 EFCAB9A8MZ26 197 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 APOL3O95236 402 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 NSA2O95478 260 aaKnown RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 GNSP15586 552 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 OPRL1P41146 370 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 SEPHS1P49903 392 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 STX4Q12846 297 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 MED22Q15528 200 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 MOGQ16653 247 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 DECR1Q16698 335 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 ZCCHC12Q6PEW1 402 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 RRM2BQ7LG56 351 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 GJD3Q8N144 294 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 FAM26EQ8N5C1 309 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 POGLUT1Q8NBL1 392 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 TRUB1Q8WWH5 349 aaKnown RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 HOXB13Q92826 284 aaPredicted RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 RNF31Q96EP0 1072 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 SPACA7Q96KW9 195 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 LRR1Q96L50 414 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 PCED1AQ9H1Q7 454 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 TRIM45Q9H8W5 580 aaPredicted RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 FOLH1BQ9HBA9 442 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 PLGRKTQ9HBL7 147 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 PRTFDC1Q9NRG1 225 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 PLCL2Q9UPR0 1127 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 TLCD2A6NGC4 264 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 RHPN2P1A8MT19 583 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 M0R3G1 203 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 KLF4O43474 513 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 CTNSO60931 367 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 OR5F1O95221 314 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 CH25HO95992 272 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 DBIP07108 87 aaKnown RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 GSTM3P21266 225 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 FAM53BQ14153 422 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 ZNF267Q14586 743 aaPredicted RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 SNAPC1Q16533 368 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 SLC30A6Q6NXT4 461 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 TSSK4Q6SA08 328 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 SLC25A45Q8N413 288 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 ZNF614Q8N883 585 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 OR4Q3Q8NH05 313 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 PIGXQ8TBF5 258 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 RBM18Q96H35 190 aaKnown RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 ZNF582Q96NG8 517 aaPredicted RBP13.42□□□□□ -0.26
VRK3-217ENST00000599538 ANKRD19PQ9H560 264 aa13.42□□□□□ -0.26
VRK3-217ENST00000599538 A0A1B0GVT2 93 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 AIREO43918 545 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 LYPD3O95274 346 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 NADKO95544 446 aaPredicted RBP13.41□□□□□ -0.26
VRK3-217ENST00000599538 GIMD1P0DJR0 217 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 PIPP12273 146 aaPredicted RBP13.41□□□□□ -0.26
VRK3-217ENST00000599538 RGS6P49758 472 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 PGDP52209 483 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 SMSP52788 366 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 DBPQ10586 325 aaPredicted RBP13.41□□□□□ -0.26
VRK3-217ENST00000599538 OR1Q1Q15612 314 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 OCLNQ16625 522 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 AMZ1Q400G9 498 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 FLYWCH1Q4VC44 716 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 PDZK1Q5T2W1 519 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 NPSR1Q6W5P4 371 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 RASSF6Q6ZTQ3 369 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 BTLAQ7Z6A9 289 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 OR51Q1Q8NH59 317 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 PFN4Q8NHR9 129 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.41□□□□□ -0.26
VRK3-217ENST00000599538 CNOT9Q92600 299 aaKnown RBP13.41□□□□□ -0.26
VRK3-217ENST00000599538 CLDN23Q96B33 292 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 VSTM2LQ96N03 204 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 MGLLQ99685 303 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 BCL7BQ9BQE9 202 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 CNPPD1Q9BV87 410 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 PDE7BQ9NP56 450 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 C20orf141Q9NUB4 165 aa13.41□□□□□ -0.26
VRK3-217ENST00000599538 CNOT3O75175 753 aaKnown RBP13.4□□□□□ -0.26
VRK3-217ENST00000599538 FOSL2P15408 326 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 CD1CP29017 333 aa13.4□□□□□ -0.26
VRK3-217ENST00000599538 IGLV3-21P80748 117 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms