RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SLC44A2	Q8IWA5	706 aa	Predicted RBP	14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	LGI4	Q8N135	537 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	D2HGDH	Q8N465	521 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	FAM181A	Q8N9Y4	354 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	XAGE5	Q8WWM1	108 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	COL26A1	Q96A83	441 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	AIFM2	Q9BRQ8	373 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	ITPA	Q9BY32	194 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	ALOXE3	Q9BYJ1	711 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	C3orf14	Q9HBI5	128 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	ACOT13	Q9NPJ3	140 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	ACOXL	Q9NUZ1	547 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	HCN3	Q9P1Z3	774 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	P2RX2	Q9UBL9	471 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	PCDHGB2	Q9Y5G2	931 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	KCNE3	Q9Y6H6	103 aa		14.37	□□□□□ -0.11
DDX39A-209	ENST00000589318	PIGA	P37287	484 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	GCGR	P47871	477 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR3A3	P47888	321 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	MAT1A	Q00266	395 aa	Known RBP	14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	TAGLN	Q01995	201 aa	Known RBP	14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	GPR50	Q13585	617 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	NR0B2	Q15466	257 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	SNAP47	Q5SQN1	464 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR2T5	Q6IEZ7	315 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	NOXA1	Q86UR1	476 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	CACTIN-AS1	Q8N1I8	211 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR2T29	Q8NH02	315 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	APOBEC4	Q8WW27	367 aa	Known RBP	14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	ERVK-18	Q9QC07	812 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	TRPC4	Q9UBN4	977 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	NUP50	Q9UKX7	468 aa		14.36	□□□□□ -0.11
DDX39A-209	ENST00000589318	C5orf58	C9J3I9	102 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TGFBR3L	H3BV60	316 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	GNGT2	O14610	69 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	YKT6	O15498	198 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ARHGEF9	O43307	516 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SP9	P0CG40	484 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ITGA1	P56199	1179 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	IL5RA	Q01344	420 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	MGAT2	Q10469	447 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SQSTM1	Q13501	440 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SYT16	Q17RD7	645 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ZNF528	Q3MIS6	628 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CYP27C1	Q4G0S4	372 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SLC23A3	Q6PIS1	610 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ZNF517	Q6ZMY9	492 aa	Predicted RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	OLIG3	Q7RTU3	272 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	PLCZ1	Q86YW0	608 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TOR1AIP2	Q8NFQ8	470 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CEP76	Q8TAP6	659 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR7D2	Q96RA2	312 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TREX2	Q9BQ50	279 aa	Predicted RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	RBCK1	Q9BYM8	510 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	EQTN	Q9NQ60	294 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	NDUFAF4	Q9P032	175 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CLCA2	Q9UQC9	943 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ZNF451	Q9Y4E5	1061 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CLDN16	Q9Y5I7	305 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	FER1L5	A0AVI2	2057 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	WDR87	Q6ZQQ6	2873 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TTC28	Q96AY4	2481 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TMEM150C	B9EJG8	249 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SLC28A2	O43868	658 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	DPM1	O60762	260 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	IFNA14	P01570	189 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CHRM4	P08173	479 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	MSL3P1	P0C860	447 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	IL7	P13232	177 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	RNH1	P13489	461 aa	Known RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	FOLR1	P15328	257 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CTRB1	P17538	263 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ERP29	P30040	261 aa	Known RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TGFBR2	P37173	567 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR1E2	P47887	323 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SKP1	P63208	163 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	GRM7	Q14831	915 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	PRICKLE4	Q2TBC4	344 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	IFI44L	Q53G44	452 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TRMT12	Q53H54	448 aa	Known RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	TRIM61	Q5EBN2	209 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ANKRD34A	Q69YU3	496 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	CTRB2	Q6GPI1	263 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	MFSD12	Q6NUT3	480 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	ZNF574	Q6ZN55	896 aa	Predicted RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	SLC38A6	Q8IZM9	456 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	FAM83F	Q8NEG4	500 aa	Predicted RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	GPR32P1	Q8NGA4	272 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR6C4	Q8NGE1	309 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	OR1L3	Q8NH93	324 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	PEX11G	Q96HA9	241 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	MS4A4E	Q96PG1	132 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	BARD1	Q99728	777 aa	Known RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	C6orf62	Q9GZU0	229 aa	Predicted RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	PAQR5	Q9NXK6	330 aa	Predicted RBP	14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	PTGFRN	Q9P2B2	879 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318	LYVE1	Q9Y5Y7	322 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318		U3KQV3	271 aa		14.35	□□□□□ -0.11
DDX39A-209	ENST00000589318		A0A1W2PQM1	296 aa		14.34	□□□□□ -0.11
DDX39A-209	ENST00000589318	CDK2AP1	O14519	115 aa		14.34	□□□□□ -0.11

Retrieved 100 of 20,778 RNA–protein pairs in 23 ms