RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ZGLP1P0C6A0 271 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 NAGAP17050 411 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 COL8A1P27658 744 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 OR1E2P47887 323 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 LIMS1P48059 325 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 CLK3P49761 638 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 PGDP52209 483 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 PDX1P52945 283 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 EMP2P54851 167 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 UGT2B15P54855 530 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 NRG3P56975 720 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 NUP107P57740 925 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 RGS8P57771 180 aaPredicted RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 TAS2R41P59536 307 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 BTG2P78543 158 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 PSG6Q00889 435 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 ID2Q02363 134 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 ZNF141Q15928 474 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 CSRP2Q16527 193 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 FLYWCH1Q4VC44 716 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 RPS26P11Q5JNZ5 115 aaPredicted RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 DCAF12Q5T6F0 453 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 CD300LDQ6UXZ3 194 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 FRRS1Q6ZNA5 592 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 USP51Q70EK9 711 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 CDK20Q8IZL9 346 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 CACTIN-AS1Q8N1I8 211 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 SLC43A2Q8N370 569 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 GPR32P1Q8NGA4 272 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 C16orf52Q8NHV5 167 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 STT3BQ8TCJ2 826 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 PTPMT1Q8WUK0 201 aaPredicted RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 TRUB1Q8WWH5 349 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 MPP4Q96JB8 637 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 LCORQ96JN0 433 aaPredicted RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 FEVQ99581 238 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 CTRCQ99895 268 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 ZNF559Q9BR84 538 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 DDA1Q9BW61 102 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 DGCR6LQ9BY27 220 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 GABARAPL3Q9BY60 117 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 MRPS26Q9BYN8 205 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 PRRG3Q9BZD7 231 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 TRIM2Q9C040 744 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 FAM192AQ9GZU8 254 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 TOR3AQ9H497 397 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 TMEM27Q9HBJ8 222 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 NECTIN3Q9NQS3 549 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 UBQLN4Q9NRR5 601 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 PNO1Q9NRX1 252 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 SCN3BQ9NY72 215 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 SELENONQ9NZV5 590 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 DHCR7Q9UBM7 475 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 CBLCQ9ULV8 474 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 PPIEQ9UNP9 301 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 ERVK-19Q9WJR5 959 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 GPR55Q9Y2T6 319 aaPredicted RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 TESMINQ9Y4I5 508 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 HRH3Q9Y5N1 445 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 MAU2Q9Y6X3 613 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 SETXQ7Z333 2677 aaKnown RBP7.39□□□□□ -1.23
VPS39-213ENST00000570062 FANCMQ8IYD8 2048 aa7.39□□□□□ -1.23
VPS39-213ENST00000570062 SPAG17Q6Q759 2223 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 C2orf92A0A1B0GVN3 265 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 LNP1A1A4G5 178 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CDHR4A6H8M9 788 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SNTNA6NMZ2 147 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 EFCAB7A8K855 629 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 M0R3G1 203 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SCDO00767 359 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 DLGAP1O14490 977 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 FCMRO60667 390 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 ALOX12BO75342 701 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 RFPL3O75679 317 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CDC123O75794 336 aaPredicted RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 CYP7B1O75881 506 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 IL33O95760 270 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CLPTM1O96005 669 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 IGKV3-11P04433 115 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CTSBP07858 339 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 NGFRP08138 427 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CT62P0C5K7 136 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 CCDC159P0C7I6 412 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 BMP4P12644 408 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 MYF5P13349 255 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 MAOAP21397 527 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 TTKP33981 857 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SLC6A8P48029 635 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 DAPP51397 102 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SH3BGRP55822 239 aaPredicted RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 SLC37A1P57057 533 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 COPZ1P61923 177 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 EEF1A1P68104 462 aaKnown RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 ALDH6A1Q02252 535 aaKnown RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 FUT5Q11128 374 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 NPRL3Q12980 569 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 EFR3AQ14156 821 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 EXOSC7Q15024 291 aaKnown RBP7.38□□□□□ -1.23
VPS39-213ENST00000570062 GPR68Q15743 365 aa7.38□□□□□ -1.23
VPS39-213ENST00000570062 SYT16Q17RD7 645 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms