RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	OR10A4	Q9H209	315 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	DMAP1	Q9NPF5	467 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	SPATA7	Q9P0W8	599 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ANAPC5	Q9UJX4	755 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF221	Q9UK13	617 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	BARX2	Q9UMQ3	279 aa	Predicted RBP	2.54	□□□□□ -2
VPS13C-208	ENST00000559119	LRRC42	Q9Y546	428 aa		2.54	□□□□□ -2
VPS13C-208	ENST00000559119	IQGAP3	Q86VI3	1631 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	GLI2	P10070	1586 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	CDC42BPG	Q6DT37	1551 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SAMD9L	Q8IVG5	1584 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	MAST1	Q9Y2H9	1570 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ATP7B	P35670	1465 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ZFYVE9	O95405	1425 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	LRRK1	Q38SD2	2015 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	AFF2	P51816	1311 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	MAP3K15	Q6ZN16	1313 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	USP42	Q9H9J4	1324 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	KIR2DL5B	A0A0G2JN68	375 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	KIR2DL5B	A0A0G2JPC4	375 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ARHGEF37	A1IGU5	675 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	VPS37C	A5D8V6	355 aa	Predicted RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	GMNC	A6NCL1	334 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	WDR46	O15213	610 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	BIRC5	O15392	142 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	HSF2BP	O75031	334 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SMIM24	O75264	130 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	RAD51D	O75771	328 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	FLOT1	O75955	427 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	HSPA4L	O95757	839 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	CPA3	P15088	417 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	DES	P17661	470 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	UGT1A3	P35503	534 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	MDH1	P40925	334 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	PFN3	P60673	137 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ROR1	Q01973	937 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	MYL5	Q02045	173 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	CCDC92	Q53HC0	331 aa	Predicted RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	TTMP	Q5BVD1	217 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	C1orf141	Q5JVX7	400 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	HECTD3	Q5T447	861 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SPECC1L	Q69YQ0	1117 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	RPUSD3	Q6P087	351 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	DCLRE1A	Q6PJP8	1040 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	PRSS48	Q7RTY5	328 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SPATA19	Q7Z5L4	167 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SLFN11	Q7Z7L1	901 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF589	Q86UQ0	364 aa	Predicted RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	THNSL1	Q8IYQ7	743 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	KIR2DL5A	Q8N109	375 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ZNF786	Q8N393	782 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	STKLD1	Q8NE28	680 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	MAIP1	Q8WWC4	291 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	RSPH1	Q8WYR4	309 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	DNASE1L2	Q92874	299 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	OPTN	Q96CV9	577 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	CAPNS2	Q96L46	248 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	INTS14	Q96SY0	518 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	NAP1L3	Q99457	506 aa	Predicted RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ADPGK	Q9BRR6	497 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	NUSAP1	Q9BXS6	441 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	YIPF3	Q9GZM5	350 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	HSD3B7	Q9H2F3	369 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	VCX	Q9H320	206 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	VCX3B	Q9H321	246 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	VCX3A	Q9NNX9	186 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	SLCO1C1	Q9NYB5	712 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	MIS18A	Q9NYP9	233 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	GIMAP2	Q9UG22	337 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	RPL26L1	Q9UNX3	145 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ERVK-19	Q9WJR5	959 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	TMED5	Q9Y3A6	229 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	KNDC1	Q76NI1	1749 aa		2.53	□□□□□ -2
VPS13C-208	ENST00000559119	ZC3H13	Q5T200	1668 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	TARBP1	Q13395	1621 aa	Known RBP	2.53	□□□□□ -2
VPS13C-208	ENST00000559119	INO80	Q9ULG1	1556 aa	Predicted RBP	2.53	□□□□□ -2.01
VPS13C-208	ENST00000559119	NUP153	P49790	1475 aa	Known RBP	2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	PLCH2	O75038	1416 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	ANKAR	Q7Z5J8	1434 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	NSD3	Q9BZ95	1437 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	ARHGEF10	O15013	1369 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	CHD2	O14647	1828 aa	Known RBP	2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	TUBGCP6	Q96RT7	1819 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	SH3PXD2B	A1X283	911 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	YDJC	A8MPS7	323 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	HIP1	O00291	1037 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	IFIT3	O14879	490 aa	Known RBP	2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	TRAPPC3	O43617	180 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	SNAI2	O43623	268 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	YEATS4	O95619	227 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	HPN	P05981	417 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	RPSA	P08865	295 aa	Known RBP	2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	RHOXF2B	P0C7M4	288 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	ZNF18	P17022	549 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	ATP6V1C1	P21283	382 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	CCND3	P30281	292 aa	Predicted RBP	2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	CASP14	P31944	242 aa		2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	CCT6A	P40227	531 aa	Known RBP	2.52	□□□□□ -2.01
VPS13C-208	ENST00000559119	KRT83	P78385	493 aa		2.52	□□□□□ -2.01

Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms