RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 JCHAINP01591 159 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 CENPBP07199 599 aaPredicted RBP2.3□□□□□ -2.04
SCFD1-216ENST00000555550 HTR1FP30939 366 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 GPC3P51654 580 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 ZP4Q12836 540 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 AANATQ16613 207 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 LRRC36Q1X8D7 754 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 HFEQ30201 348 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 BTNL3Q6UXE8 466 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 CCDC36Q8IYA8 594 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 SFRP1Q8N474 314 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 BPIFB2Q8N4F0 458 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 NKAIN3Q8N8D7 197 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 OR2AP1Q8NGE2 309 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 ARNTL2Q8WYA1 636 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 PTP4A1Q93096 173 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 EEF2KMTQ96G04 330 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 TMEM101Q96IK0 257 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 SLC35E1Q96K37 410 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 TBX15Q96SF7 602 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 C2orf40Q9H1Z8 148 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 APMAPQ9HDC9 416 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 FANCFQ9NPI8 374 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 GDAP2Q9NXN4 497 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 SPRR3Q9UBC9 169 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 BCAP29Q9UHQ4 241 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 IFT52Q9Y366 437 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 CACNG2Q9Y698 323 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 ZMYM6O95789 1325 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 RAD54L2Q9Y4B4 1467 aa2.3□□□□□ -2.04
SCFD1-216ENST00000555550 PLEKHG1Q9ULL1 1385 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 IGHV7-81A0A0B4J1V7 117 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 IMPA2O14732 288 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 CASKO14936 926 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 CXCL14O95715 111 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 HMOX1P09601 288 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 CTNNA1P35221 906 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 GCKP35557 465 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 NUMBP49757 651 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 SRP54P61011 504 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 MRPS11P82912 194 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 MRPS6P82932 125 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 EGFEM1PQ0D2K5 195 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 DAZ2Q13117 558 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 LEG1Q6P5S2 330 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF562Q6V9R5 426 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 DNM1P46Q6ZS02 220 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 NET1Q7Z628 596 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 IFNEQ86WN2 208 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 IQCA1Q86XH1 822 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 H1FOOQ8IZA3 346 aaPredicted RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 ARFGAP2Q8N6H7 521 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 OR2A12Q8NGT7 310 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 TRUB1Q8WWH5 349 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 ELMO2Q96JJ3 720 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 NRTNQ99748 197 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 COQ7Q99807 217 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 DAZ3Q9NR90 486 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 ARHGAP21Q5T5U3 1957 aa2.29□□□□□ -2.04
SCFD1-216ENST00000555550 ZNFX1Q9P2E3 1918 aaKnown RBP2.29□□□□□ -2.04
SCFD1-216ENST00000555550 PARD3Q8TEW0 1356 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 IGKV2-28A0A075B6P5 120 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 TRBV6-6A0A0A6YYG2 114 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 A0A0U1RRA0 63 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 FBLL1A6NHQ2 334 aaKnown RBP2.28□□□□□ -2.04
SCFD1-216ENST00000555550 TM9SF1O15321 606 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 IGKV2D-28P01615 120 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 HTR1EP28566 365 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 RPS10P46783 165 aaKnown RBP2.28□□□□□ -2.04
SCFD1-216ENST00000555550 GNPDA1P46926 289 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 SLC6A8P48029 635 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 NUP107P57740 925 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 RND3P61587 244 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 VLDLRP98155 873 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 MYBPC1Q00872 1141 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF154Q13106 437 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 KCTD19Q17RG1 926 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-216ENST00000555550 LRIT3Q3SXY7 679 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF691Q5VV52 312 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 KRT77Q7Z794 578 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 TMEM252Q8N6L7 170 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF540Q8NDQ6 660 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 TMEM185AQ8NFB2 350 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 NEK11Q8NG66 645 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 MARCH1Q8TCQ1 289 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 RDH5Q92781 318 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 TXN2Q99757 166 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 CTRCQ99895 268 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 CAB39LQ9H9S4 337 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 NANSQ9NR45 359 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 ZNF490Q9ULM2 529 aaPredicted RBP2.28□□□□□ -2.04
SCFD1-216ENST00000555550 TDRKHQ9Y2W6 561 aaKnown RBP2.28□□□□□ -2.04
SCFD1-216ENST00000555550 WSB1Q9Y6I7 421 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 CDH10Q9Y6N8 788 aa2.28□□□□□ -2.04
SCFD1-216ENST00000555550 METP08581 1390 aa2.27□□□□□ -2.05
SCFD1-216ENST00000555550 K7ENP7 123 aa2.27□□□□□ -2.05
SCFD1-216ENST00000555550 ALOX15BO15296 676 aa2.27□□□□□ -2.05
SCFD1-216ENST00000555550 ZNF264O43296 627 aa2.27□□□□□ -2.05
SCFD1-216ENST00000555550 SNAI2O43623 268 aa2.27□□□□□ -2.05
SCFD1-216ENST00000555550 GOSR1O95249 250 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms