RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 SLC52A3Q9NQ40 469 aa9.64□□□□□ -0.87
SHMT2-215ENST00000554656 RYDENQ9NUL5 291 aaKnown RBP9.64□□□□□ -0.87
SHMT2-215ENST00000554656 GID8Q9NWU2 228 aa9.64□□□□□ -0.87
SHMT2-215ENST00000554656 AHSPQ9NZD4 102 aa9.64□□□□□ -0.87
SHMT2-215ENST00000554656 LEF1Q9UJU2 399 aaPredicted RBP9.64□□□□□ -0.87
SHMT2-215ENST00000554656 PLEKHA6Q9Y2H5 1048 aa9.64□□□□□ -0.87
SHMT2-215ENST00000554656 WBP11Q9Y2W2 641 aaKnown RBP9.64□□□□□ -0.87
SHMT2-215ENST00000554656 AHRRA9YTQ3 701 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NR5A2O00482 541 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 FBP2O00757 339 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 DVL2O14641 736 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 TP53I11O14683 189 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 GNB5O14775 395 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 MRASO14807 208 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 AIM2O14862 343 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 TRAPPC6AO75865 159 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 CBX7O95931 251 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 IL6P05231 212 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 ABCB1P08183 1280 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 PRPS1L1P21108 318 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NT5EP21589 574 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 TACR1P25103 407 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 PTPN6P29350 595 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NUDT2P50583 147 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 XKP51811 444 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 AGFG1P52594 562 aaKnown RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 UFM1P61960 85 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 ELF3P78545 371 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 EXOSC7Q15024 291 aaKnown RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 LTB4RQ15722 352 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 PRICKLE4Q2TBC4 344 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NHSL2Q5HYW2 709 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 WIPI1Q5MNZ9 446 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 C6orf163Q5TEZ5 329 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NSUN5P2Q63ZY6 315 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NOXRED1Q6NXP6 359 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 COMMD6Q7Z4G1 85 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 ARPINQ7Z6K5 226 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 TGIF2LYQ8IUE0 185 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 DEFB107AQ8IZN7 70 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 METTL4Q8N3J2 472 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 FAM83FQ8NEG4 500 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 OR4K14Q8NGD5 310 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 OR9I1Q8NGQ6 314 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 FBXO27Q8NI29 283 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 HGDQ93099 445 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 TMEM41AQ96HV5 264 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NODALQ96S42 347 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 SECISBP2Q96T21 854 aaKnown RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 HOPXQ9BPY8 73 aaPredicted RBP9.63□□□□□ -0.87
SHMT2-215ENST00000554656 ITPAQ9BY32 194 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 GALNT9Q9HCQ5 603 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 MAT2BQ9NZL9 334 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 ZNF639Q9UID6 485 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 ADAM29Q9UKF5 820 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 CAMK2AQ9UQM7 478 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 PCDHA9Q9Y5H5 950 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 PCNX3Q9H6A9 2034 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 VPS13CQ709C8 3753 aa9.63□□□□□ -0.87
SHMT2-215ENST00000554656 NUP214P35658 2090 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 C2orf72A6NCS6 295 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 MBD3L4A6NDZ8 208 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 MBD3L3A6NE82 208 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 CCDC154A6NI56 674 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 MBD3L5A6NJ08 208 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 CD8B2A6NJW9 211 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 B4DXG7 233 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 MGRN1O60291 552 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 PPM1BO75688 479 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 CIB2O75838 187 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 SNX4O95219 450 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 CD99P14209 185 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 PORP16435 677 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 SDC1P18827 310 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 KLK2P20151 261 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 TIA1P31483 386 aaKnown RBP eCLIP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 RPL3P39023 403 aaKnown RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 FEN1P39748 380 aaKnown RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 MASP1P48740 699 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 TMED10P49755 219 aaKnown RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 SLC25A3Q00325 362 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 LRRC74AQ0VAA2 488 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 FOXD4Q12950 439 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 TRMT5Q32P41 509 aaKnown RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 KRTAP21-3Q3LHN1 58 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 HLA-DQA1Q5Y7H0 255 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 TIGD3Q6B0B8 471 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 FAM180BQ6P0A1 224 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 SLC48A1Q6P1K1 146 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 C8orf82Q6P1X6 216 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 TMEM81Q6P7N7 255 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 PLXDC2Q6UX71 529 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 ANGPTL8Q6UXH0 198 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 PAGE2Q7Z2X7 111 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 NET1Q7Z628 596 aaPredicted RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 YRDCQ86U90 279 aaKnown RBP9.62□□□□□ -0.87
SHMT2-215ENST00000554656 RIMKLAQ8IXN7 391 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 VWA5B2Q8N398 1253 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 C9orf106Q8NAJ2 232 aa9.62□□□□□ -0.87
SHMT2-215ENST00000554656 C17orf47Q8NEP4 570 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms