RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 AP3B1O00203 1094 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 TRIM3O75382 744 aaPredicted RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 CALB2P22676 271 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 RPL4P36578 427 aaKnown RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 TAGLN2P37802 199 aaKnown RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 BDKRB1P46663 353 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 NOVA1P51513 510 aaKnown RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 ARHGDIAP52565 204 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 EWSR1Q01844 656 aaKnown RBP eCLIP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 PLOD1Q02809 727 aaPredicted RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 ELAVL2Q12926 359 aaKnown RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 MESDQ14696 234 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 C17orf58Q2M2W7 97 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 GGTA1PQ4G0N0 100 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 TMEM52BQ4KMG9 183 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 FILIP1LQ4L180 1135 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 BOLA3Q53S33 107 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 C2CD6Q53TS8 623 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 MS4A13Q5J8X5 152 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 CCDC183Q5T5S1 534 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 FAM71F2Q6NXP2 309 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 KIAA1328Q86T90 577 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 CLDN19Q8N6F1 224 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 ZSCAN4Q8NAM6 433 aaPredicted RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 BHLHE23Q8NDY6 225 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 TBCKQ8TEA7 893 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 PIGCQ92535 297 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 TUBGCP3Q96CW5 907 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 COQ2Q96H96 371 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 SH3YL1Q96HL8 342 aaPredicted RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 C7orf34Q96L11 122 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 LINC00479Q96M42 142 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 AMDHD1Q96NU7 426 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 MCRIP2Q9BUT9 160 aaKnown RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 CAPS2Q9BXY5 557 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 CRNKL1Q9BZJ0 848 aaKnown RBP4.07□□□□□ -1.76
SCFD1-209ENST00000553280 AMBNQ9NP70 447 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 PIPOXQ9P0Z9 390 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 MDFICQ9P1T7 246 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 MUTYHQ9UIF7 546 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 RPH3ALQ9UNE2 315 aa4.07□□□□□ -1.76
SCFD1-209ENST00000553280 IGHV3OR16-12A0A075B7B8 117 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 TRAV26-1A0A087WT03 109 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 IGHV3-16A0A0C4DH30 117 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 ZSCAN5BA6NJL1 495 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 PRRG1O14668 218 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 EFNA2O43921 213 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 TPST2O60704 377 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 IGHG3P01860 377 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 PVRP15151 417 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 PGCP20142 388 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 OXTRP30559 389 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 CEBPDP49716 269 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 CSRP3P50461 194 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 ATP12AP54707 1039 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 IRX1P78414 480 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 MAP2K1Q02750 393 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 DDX39BQ13838 428 aaKnown RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 C14orf28Q4W4Y0 310 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 EFL1Q7Z2Z2 1120 aaKnown RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 C16orf62Q7Z3J2 963 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 ACOT1Q86TX2 421 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 LRRC49Q8IUZ0 686 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 VSTM4Q8IW00 320 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 BPIFB2Q8N4F0 458 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 MIPOL1Q8TD10 442 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 ZNF597Q96LX8 424 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 C9orf85Q96MD7 179 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 AGAP3Q96P47 875 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 TGM7Q96PF1 710 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 RIT2Q99578 217 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 TMEM43Q9BTV4 400 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 MEPEQ9NQ76 525 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 RCOR3Q9P2K3 495 aaPredicted RBP4.06□□□□□ -1.76
SCFD1-209ENST00000553280 LCMT1Q9UIC8 334 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 RNF24Q9Y225 148 aa4.06□□□□□ -1.76
SCFD1-209ENST00000553280 IGHV3OR16-10A0A075B7F0 116 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 TRABD2BA6NFA1 517 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 NPIPA7E9PJI5 369 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 OR7A17O14581 309 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 ZNF208O43345 1280 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 ZG16O60844 167 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 B4GALT2O60909 372 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 IGKV3-20P01619 116 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 NPIPA8P0DM63 369 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 SDC1P18827 310 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 IGFBP5P24593 272 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 CDH5P33151 784 aaPredicted RBP4.05□□□□□ -1.76
SCFD1-209ENST00000553280 BDH1Q02338 343 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 RGS1Q08116 209 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 NCBP1Q09161 790 aaKnown RBP4.05□□□□□ -1.76
SCFD1-209ENST00000553280 GANABQ14697 944 aaKnown RBP4.05□□□□□ -1.76
SCFD1-209ENST00000553280 C10orf120Q5SQS8 335 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 ZC2HC1BQ5TFG8 222 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 GCNT7Q6ZNI0 430 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 TMUB2Q71RG4 321 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 IFNEQ86WN2 208 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 UBQLNLQ8IYU4 475 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 WDSUB1Q8N9V3 476 aa4.05□□□□□ -1.76
SCFD1-209ENST00000553280 RFESDQ8TAC1 157 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms