RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CSNK2A2P19784 350 aaPredicted RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 PKLRP30613 574 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 MAT2AP31153 395 aaKnown RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 FGF9P31371 208 aaPredicted RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 ATP6V1E1P36543 226 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 BTN3A2P78410 334 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ID2Q02363 134 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 CSTF1Q05048 431 aaKnown RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 ST3GAL3Q11203 375 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 LRRC32Q14392 662 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ARHGEF6Q15052 776 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 QPRTQ15274 297 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 DUSP6Q16828 381 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 C2orf27AQ580R0 203 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 FAM27D1Q5T7N8 215 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 LCN1P1Q5VSP4 162 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 FCRLBQ6BAA4 426 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SMARCD3Q6STE5 483 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PLEKHM3Q6ZWE6 761 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ADGRD2Q7Z7M1 963 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 NOXA1Q86UR1 476 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 LINC00471Q8N535 108 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 GALNT6Q8NCL4 622 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 OR2L5Q8NG80 312 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 OR7G2Q8NG99 324 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 OR56A1Q8NGH5 318 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PIGXQ8TBF5 258 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 CHFRQ96EP1 664 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 GFM1Q96RP9 751 aaKnown RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 SMAD5Q99717 465 aaKnown RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 HCAR1Q9BXC0 346 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 HDAC8Q9BY41 377 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SLC6A17Q9H1V8 727 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 C11orf49Q9H6J7 331 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 CBLCQ9ULV8 474 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SLC7A7Q9UM01 511 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 GPSM3Q9Y4H4 160 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ALG5Q9Y673 324 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TRBV23OR9-2A0A075B6M9 112 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 GSAPA4D1B5 854 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SCO2O43819 266 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PRICKLE3O43900 615 aaPredicted RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 EFCAB14O75071 495 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 NFATC1O95644 943 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 CEACAM5P06731 702 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ASGR2P07307 311 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 GKN3PP0CG01 181 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ELK1P19419 428 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 MAP2K3P46734 347 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 GCGRP47871 477 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 EVX1P49640 407 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 FXYD6P3P58550 94 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PRR5P85299 388 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 EFR3AQ14156 821 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 CCDC85BQ15834 202 aaPredicted RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 PGGHGQ32M88 737 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TRIQKQ629K1 86 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PLBD1Q6P4A8 553 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 PLET1Q6UQ28 207 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 WDR88Q6ZMY6 472 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 FRRS1Q6ZNA5 592 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ZNF620Q6ZNG0 422 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 NANOGNBQ7Z5D8 188 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TMEFF1Q8IYR6 380 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 HDDC3Q8N4P3 179 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 YIPF7Q8N8F6 280 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 C19orf18Q8NEA5 215 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 C7orf57Q8NEG2 295 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 OR2L8Q8NGY9 312 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SFXN5Q8TD22 340 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ACOT11Q8WXI4 607 aaPredicted RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 AP3S1Q92572 193 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SLC41A3Q96GZ6 507 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ASB16Q96NS5 453 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TIMP4Q99727 224 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 SOSTQ9BQB4 213 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 WACQ9BTA9 647 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 DPH1Q9BZG8 443 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TRIM45Q9H8W5 580 aaPredicted RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 ATP13A2Q9NQ11 1180 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 C20orf141Q9NUB4 165 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 FBXO34Q9NWN3 711 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 IL20Q9NYY1 176 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 ACSL5Q9ULC5 683 aa7□□□□□ -1.29
LIMA1-213ENST00000552720 TDRD6O60522 2096 aaKnown RBP7□□□□□ -1.29
LIMA1-213ENST00000552720 HEATR5AQ86XA9 2040 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 A0A0G2JMP0 313 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 A0A0X1KG70 313 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 SNTNA6NMZ2 147 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ISM1B1AKI9 464 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 BTN3A3O00478 584 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 LYRM1O43325 122 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 LANCL1O43813 399 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 CPNE3O75131 537 aaKnown RBP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 HNRNPA1P09651 372 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIMA1-213ENST00000552720 FAM157BP0CG42 384 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 CHRNB1P11230 501 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 ALAS2P22557 587 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 MPIP34949 423 aa6.99□□□□□ -1.29
LIMA1-213ENST00000552720 AGFG1P52594 562 aaKnown RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms