RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 STX7O15400 261 aaKnown RBP3.2□□□□□ -1.9
VPS29-205ENST00000548539 UFL1O94874 794 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 MFN2O95140 757 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 PRAMEF12O95522 483 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 UMPSP11172 480 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 PRG2P13727 222 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 BCL3P20749 454 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 RGS1Q08116 209 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 PUDPQ08623 228 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 PJVKQ0ZLH3 352 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 PEX6Q13608 980 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 TPD52L1Q16890 204 aaPredicted RBP3.2□□□□□ -1.9
VPS29-205ENST00000548539 ANKDD1AQ495B1 522 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 RABGAP1LQ5R372 815 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 LGSNQ5TDP6 509 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 CEACAM19Q7Z692 300 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 KIAA1328Q86T90 577 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 ZDHHC21Q8IVQ6 265 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 MCOLN2Q8IZK6 566 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 FGFRL1Q8N441 504 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 NANPQ8TBE9 248 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 PNPT1Q8TCS8 783 aaKnown RBP3.2□□□□□ -1.9
VPS29-205ENST00000548539 FAM222BQ8WU58 562 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 C9orf85Q96MD7 179 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 CASD1Q96PB1 797 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 RANBP9Q96S59 729 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 TM2D1Q9BX74 207 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 TEX13BQ9BXU2 312 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 POLD4Q9HCU8 107 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 FER1L5A0AVI2 2057 aa3.2□□□□□ -1.9
VPS29-205ENST00000548539 ESYT2A0FGR8 921 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ANGPT2O15123 496 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 OR1F1O43749 312 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 GMFGO60234 142 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ZNF354AO60765 605 aaPredicted RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 KRTAP5-8O75690 187 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 KRT8P05787 483 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 UGT2B4P06133 528 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 SLC35E2P0CK97 266 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 LAMP1P11279 417 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 RPA2P15927 270 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 GATA1P15976 413 aaPredicted RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 GATA2P23769 480 aaPredicted RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 HTR2AP28223 471 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ADSSP30520 456 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 BDKRB1P46663 353 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 OR1D4P47884 311 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ACADVLP49748 655 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 EMDP50402 254 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 NTHL1P78549 312 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 PDK4Q16654 411 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 TCTEX1D4Q5JR98 221 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 CELF3Q5SZQ8 465 aaKnown RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 MEDAGQ5VYS4 303 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ZNF57Q68EA5 555 aaPredicted RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 ZNF600Q6ZNG1 722 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 BPIFB2Q8N4F0 458 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ZSCAN4Q8NAM6 433 aaPredicted RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 OR2T33Q8NG76 320 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 VN1R17PQ8TDU5 208 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 SDSLQ96GA7 329 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 CCT8L2Q96SF2 557 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 HCAR1Q9BXC0 346 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 IMPAD1Q9NX62 359 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 CLEC5AQ9NY25 188 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 ZNF581Q9P0T4 197 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 RSPH14Q9UHP6 348 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 XPO7Q9UIA9 1087 aaKnown RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 ANAPC7Q9UJX3 599 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 RNF6Q9Y252 685 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 EIF3LQ9Y262 564 aaKnown RBP3.19□□□□□ -1.9
VPS29-205ENST00000548539 CARMIL1Q5VZK9 1371 aa3.19□□□□□ -1.9
VPS29-205ENST00000548539 SAGE2PA6NJ88 616 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 CLDN5O00501 218 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 CTAGE5O15320 804 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 NOL4O94818 638 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 SLC2A10O95528 541 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 H2AFXP16104 143 aaPredicted RBP3.18□□□□□ -1.9
VPS29-205ENST00000548539 UQCRC2P22695 453 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 IGFBP5P24593 272 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 PSMA2P25787 234 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 IL2RGP31785 369 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 PRPHP41219 470 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 MAGEA9P43362 315 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 GNPDA1P46926 289 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 ALDH3B2P48448 385 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 EWSR1Q01844 656 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS29-205ENST00000548539 PAX2Q02962 417 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 HIGD2BQ4VC39 106 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 ACSM5Q6NUN0 579 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 LRRC70Q7Z2Q7 622 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 ANKRD37Q7Z713 158 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 TMEM17Q86X19 198 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 ADAMTS16Q8TE57 1224 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 AGAP11Q8TF27 550 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 RPL3LQ92901 407 aaKnown RBP3.18□□□□□ -1.9
VPS29-205ENST00000548539 APOL2Q9BQE5 337 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 ALG12Q9BV10 488 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 RMND5AQ9H871 391 aa3.18□□□□□ -1.9
VPS29-205ENST00000548539 EXOSC3Q9NQT5 275 aaKnown RBP3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms