RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 PCNX3Q9H6A9 2034 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 IGLV3-32A0A0A0MS00 114 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 B4DXG7 233 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 G3V3Y1 287 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 SNPHO15079 494 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 TNFRSF21O75509 655 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 OXSR1O95747 527 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 ZNF24P17028 368 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 ELAVL4P26378 380 aaKnown RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 CASP9P55211 416 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 KCNJ2P63252 427 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 FOXK1P85037 733 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 TRMT5Q32P41 509 aaKnown RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 GRAMD1BQ3KR37 738 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 TIGD3Q6B0B8 471 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 APOOLQ6UXV4 268 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 DHDDSQ86SQ9 333 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 PACS2Q86VP3 889 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 SNX32Q86XE0 403 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 ARHGAP24Q8N264 748 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 WDSUB1Q8N9V3 476 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 PMM1Q92871 262 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 RAB8BQ92930 207 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 ZNF597Q96LX8 424 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 ANKRD27Q96NW4 1050 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 TRNT1Q96Q11 434 aaKnown RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 CGREF1Q99674 301 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 CPPED1Q9BRF8 314 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 RTN4RQ9BZR6 473 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 HOXD1Q9GZZ0 328 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 IKZF5Q9H5V7 419 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 ZNF703Q9H7S9 590 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 GALNT9Q9HCQ5 603 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 OLAHQ9NV23 265 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 BOKQ9UMX3 212 aaPredicted RBP13.22□□□□□ -0.29
CPSF1-206ENST00000531480 FREM3P0C091 2139 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 POLEQ07864 2286 aa13.22□□□□□ -0.29
CPSF1-206ENST00000531480 SVILO95425 2214 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ERICH4A6NGS2 130 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 HS6ST1O60243 411 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 KIAA0513O60268 411 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 FCMRO60667 390 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 STX11O75558 287 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 WISP2O76076 250 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 IGHG3P01860 377 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 TFPTP0C1Z6 253 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 EDN3P14138 238 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 CYLC2Q14093 348 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ZNF141Q15928 474 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 KLHL26Q53HC5 615 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 KRTCAP3Q53RY4 240 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ATAD3BQ5T9A4 648 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 REP15Q6BDI9 236 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 TYW3Q6IPR3 259 aaKnown RBP13.21□□□□□ -0.29
CPSF1-206ENST00000531480 FRRS1Q6ZNA5 592 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 SLC22A16Q86VW1 577 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 C10orf111Q8N326 155 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 TMEM251Q8N6I4 163 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 FITM2Q8N6M3 262 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ST6GALNAC3Q8NDV1 305 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 PNPT1Q8TCS8 783 aaKnown RBP13.21□□□□□ -0.29
CPSF1-206ENST00000531480 XAGE5Q8WWM1 108 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ROPN1LQ96C74 230 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 GPR137Q96N19 417 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 HHATLQ9HCP6 504 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 KLRF1Q9NZS2 232 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 KCNE5Q9UJ90 142 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 CORO2BQ9UQ03 480 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 HRH3Q9Y5N1 445 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ZNF407Q9C0G0 2248 aa13.21□□□□□ -0.29
CPSF1-206ENST00000531480 ZGRF1Q86YA3 2104 aa13.21□□□□□ -0.3
CPSF1-206ENST00000531480 DNAJC13O75165 2243 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 DSPPQ9NZW4 1301 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 LOC100653049A0A140TA62 436 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 KRT34O76011 436 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 WISP1O95388 367 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 CBX6O95503 412 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 RFPL3SP0C7P2 107 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 COX4I1P13073 169 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 ETFAP13804 333 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 RPS4Y1P22090 263 aaKnown RBP13.2□□□□□ -0.3
CPSF1-206ENST00000531480 ADH7P40394 386 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 ATP12AP54707 1039 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 DSTNP60981 165 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 ALDH6A1Q02252 535 aaKnown RBP13.2□□□□□ -0.3
CPSF1-206ENST00000531480 CMPK2Q5EBM0 449 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 ANGPTL8Q6UXH0 198 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 LRRC74BQ6ZQY2 392 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 C16orf62Q7Z3J2 963 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 GALNT10Q86SR1 603 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 CHERPQ8IWX8 916 aaKnown RBP13.2□□□□□ -0.3
CPSF1-206ENST00000531480 FAM109AQ8N4B1 249 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 FADS6Q8N9I5 356 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 PCYOX1LQ8NBM8 494 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 GALNT11Q8NCW6 608 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 SLC38A1Q9H2H9 487 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 ACKR4Q9NPB9 350 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 A4GALTQ9NPC4 353 aa13.2□□□□□ -0.3
CPSF1-206ENST00000531480 TAGLN3Q9UI15 199 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms